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tidy up, document

tidy up, document #553

Workflow file for this run

# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
on: [push, pull_request]
name: R-CMD-check
jobs:
R-CMD-check:
if: github.repository_owner != 'cloudyr'
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
fail-fast: false
matrix:
config:
- {os: windows-latest, r: 'release'}
- {os: macOS-latest, r: 'release'}
- {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
RSPM: ${{ matrix.config.rspm }}
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0 # required for mirroring, see https://stackoverflow.com/a/64272409/474349
- name: Copy to Cloudyr
if: github.repository_owner == 'Azure' && runner.os == 'Linux' && github.ref == 'refs/heads/master'
env:
token: "${{ secrets.ghPat }}"
# git config hack required, see https://stackoverflow.com/q/64270867/474349
run: |
export CLOUDYR_REPO=$(echo $GITHUB_REPOSITORY | sed "s/Azure/cloudyr/")
git config -l | grep 'http\..*\.extraheader' | cut -d= -f1 | \
xargs -L1 git config --unset-all
git push --prune https://token:[email protected]/${CLOUDYR_REPO}.git +refs/remotes/origin/*:refs/heads/* +refs/tags/*:refs/tags/*
- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
- uses: r-lib/actions/setup-pandoc@v2
- name: Query dependencies
run: |
install.packages('remotes')
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
shell: Rscript {0}
- name: Cache R packages
if: runner.os != 'Windows'
uses: actions/cache@v3
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
# restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-5-
- name: Install system dependencies
if: runner.os == 'Linux'
run: |
while read -r cmd
do
eval sudo $cmd
done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
- name: Install dependencies
run: |
remotes::install_deps(dependencies = TRUE)
remotes::install_cran(c("pkgbuild", "rcmdcheck", "drat"))
shell: Rscript {0}
- name: Check
env:
_R_CHECK_CRAN_INCOMING_REMOTE_: false
_R_CHECK_FORCE_SUGGESTS_: false
run: |
pkg <- pkgbuild::build()
rcmdcheck::rcmdcheck(pkg, args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
shell: Rscript {0}
- name: Upload check results
if: failure()
uses: actions/upload-artifact@v3
with:
name: ${{ runner.os }}-r${{ matrix.config.r }}-results
path: check
- name: Update Cloudyr drat
if: success() && github.repository_owner == 'Azure' && runner.os == 'Linux' && github.ref == 'refs/heads/master'
env:
token: "${{ secrets.ghPat }}"
run: |
cd ..
export PKGBUILD_GZ=$(ls *.gz)
mkdir drat
cd drat
git init
git config user.email "[email protected]"
git config user.name "Github Actions"
git remote add upstream "https://token:[email protected]/cloudyr/cloudyr.github.io.git"
git fetch upstream
git checkout master
Rscript -e "drat::insertPackage('../$PKGBUILD_GZ', repodir='./drat')"
git add --all
git commit -m "add $PKGBUILD_GZ (build $GITHUB_RUN_NUMBER)"
git push