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Update top_level_readme.txt #1423

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Update top_level_readme.txt #1423

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8 changes: 8 additions & 0 deletions pipeline/top_level_readme.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -18,6 +18,10 @@ output/
Top-level directory, containing pre-processed VCFs of variant data
from the contributing repositories, filtered for relevant variants,
and translated into GRCh38 coordinates as needed.
output/variants_output.tsv
TSV file containing the key fields per variant. Further variant details can be found in the release directory
output/variants_output_field_metadata.tsv
Descriptions of the fields in variants_output.tsv.
output/1000G.sorted.hg38.vcf
Variants selected from 1000 Genomes, with genotype data.
output/ClinVar.vcf
Expand Down Expand Up @@ -45,6 +49,10 @@ output/release/built_final.tsv
output/release/built_with_change_types.tsv
Tab-delimited file of the variants shared on BRCA Exchange, their attributes, and their update status since the
last release.
output/release/reports_with_change_types.tsv
Tab-delimited file that contains the variant data from one "report" of the variant, such as one ClinVar submission. See field_metadata.tsv for more details.
output/release/field_metadata.tsv
Tab-delimited file describing the fields in the built and reports tsv files.
output/release/diff/
Subdirectory containing files that detail how the set of variants has changed since the previous release
output/release/diff/added.tsv
Expand Down