BYUCamachoLab · joamatab · May 15, 2022 · May 15, 2022 · May 15, 2022 · May 15, 2022
diff --git a/.github/workflows/build-and-test.yml b/.github/workflows/build-and-test.yml
@@ -5,9 +5,9 @@ jobs:
   build:
     runs-on: ${{ matrix.os }}
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v2
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v1
         with:
           python-version: ${{ matrix.python-version }}
       - name: Install dependencies
@@ -23,7 +23,7 @@ jobs:
     strategy:
       matrix:
         os: [ubuntu-latest, windows-latest, macos-latest]
-        python-version: ['3.7', '3.8', '3.9', '3.10', '3.11.0']
+        python-version: ['3.7', '3.8', '3.9', '3.10']
 name: build and test
 on:
   pull_request:

diff --git a/.sourcery.yaml b/.sourcery.yaml
@@ -0,0 +1,2 @@
+refactor:
+  python_version: '3.7'
diff --git a/README.md b/README.md
@@ -44,23 +44,3 @@ The documentation is hosted [online](https://simphonyphotonics.readthedocs.io/en
 
 Changelogs can be found in docs/changelog/. There is a changelog file for
 each released version of the software.
-
-## Bibtex citation
-
-```
-@article{DBLP:journals/corr/abs-2009-05146,
-  author    = {Sequoia Ploeg and
-               Hyrum Gunther and
-               Ryan M. Camacho},
-  title     = {Simphony: An open-source photonic integrated circuit simulation framework},
-  journal   = {CoRR},
-  volume    = {abs/2009.05146},
-  year      = {2020},
-  url       = {https://arxiv.org/abs/2009.05146},
-  eprinttype = {arXiv},
-  eprint    = {2009.05146},
-  timestamp = {Thu, 17 Sep 2020 12:49:52 +0200},
-  biburl    = {https://dblp.org/rec/journals/corr/abs-2009-05146.bib},
-  bibsource = {dblp computer science bibliography, https://dblp.org}
-}
-```
diff --git a/docs/source/index.rst b/docs/source/index.rst
@@ -38,7 +38,6 @@ accessible through the sidebar navigation.
   tutorials/intro
   tutorials/mzi
   tutorials/filters
-  tutorials/layout_aware
 
 .. toctree::
   :hidden:

diff --git a/docs/source/reference/api.rst b/docs/source/reference/api.rst
@@ -8,11 +8,6 @@ API
   :inherited-members:
   :show-inheritance:
 
-.. automodule:: simphony.die
-  :members:
-  :inherited-members:
-  :show-inheritance:
-
 .. automodule:: simphony.formatters
   :members:
   :inherited-members:

diff --git a/docs/source/tutorials/images/layout_aware.png b/docs/source/tutorials/images/layout_aware.png
diff --git a/docs/source/tutorials/images/mzi_layout_aware.png b/docs/source/tutorials/images/mzi_layout_aware.png
diff --git a/docs/source/tutorials/intro.rst b/docs/source/tutorials/intro.rst
@@ -133,8 +133,8 @@ order to preserve the original circuit.
 Let's run a simple sweep simulation on the circuit we have
 created: ::
 
-  from simphony.simulators import SweepSimulator
-  simulation = SweepSimulator(1500e-9, 1600e-9)
+  from simphony.simulators import SweepSimulation
+  simulation = SweepSimulation(1500e-9, 1600e-9)
   simulation.multiconnect(component1['input'], component2['pin2'])
   result = simulation.simulate()
 

diff --git a/docs/source/tutorials/layout_aware.rst b/docs/source/tutorials/layout_aware.rst
diff --git a/examples/filters.py b/examples/filters.py
@@ -5,8 +5,8 @@
 #
 # File: filters.py
 
-import matplotlib.gridspec as gridspec
 import matplotlib.pyplot as plt
+import matplotlib.gridspec as gridspec
 
 from simphony.libraries import siepic, sipann
 from simphony.simulators import SweepSimulator

diff --git a/examples/layout_aware.py b/examples/layout_aware.py
diff --git a/examples/mzi.py b/examples/mzi.py
@@ -3,6 +3,7 @@
 # (see simphony/__init__.py for details)
 
 import matplotlib.pyplot as plt
+import numpy as np
 
 from simphony.libraries import siepic
 from simphony.simulation import Detector, Laser, Simulation

diff --git a/examples/subnetwork_growth.py b/examples/subnetwork_growth.py
@@ -98,7 +98,6 @@
 
 import matplotlib.pyplot as plt
 import numpy as np
-
 from simphony.connect import connect_s, innerconnect_s
 from simphony.libraries import siepic, sipann
 from simphony.tools import wl2freq