Version 1.3.58 #124
Workflow file for this run
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| on: | |
| release: | |
| types: [created] | |
| name: Publish Release | |
| jobs: | |
| generate: | |
| name: Create release-artifacts | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout the repository | |
| uses: actions/checkout@v4 | |
| - name: Set up JDK | |
| uses: actions/setup-java@v3 | |
| with: | |
| java-version: '17' | |
| distribution: 'temurin' | |
| - name: Grant execute permission for gradlew | |
| run: chmod +x gradlew | |
| - name: Build with Gradle | |
| run: | | |
| ./gradlew build; | |
| ./gradlew check; | |
| ./gradlew shadowJar -Drelease=true; | |
| ./gradlew toolDoc -Drelease=true; | |
| mv ./build/docs ./toolDoc | |
| - name: Inject slug/short variables | |
| uses: rlespinasse/[email protected] | |
| - name: Branch name | |
| run: echo running on branch ${{ env.GITHUB_REF_SLUG }} | |
| - name: Check JAR | |
| run: | | |
| java -version | |
| java -jar build/libs/DISCVRSeq-${{ env.GITHUB_REF_SLUG }}.jar -h | |
| - name: Upload Artifacts | |
| uses: softprops/action-gh-release@v1 | |
| with: | |
| files: build/libs/DISCVRSeq-${{ env.GITHUB_REF_SLUG }}.jar | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: GH Pages | |
| uses: peaceiris/[email protected] | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: ./toolDoc | |
| enable_jekyll: true | |
| - name: Docker meta | |
| id: docker_meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ghcr.io/bimberlab/discvrseq | |
| tags: | | |
| type=semver,pattern={{version}} | |
| type=semver,pattern={{major}}.{{minor}} | |
| type=sha | |
| - name: Set up QEMU | |
| uses: docker/[email protected] | |
| - name: Set up Docker Buildx | |
| uses: docker/[email protected] | |
| with: | |
| version: latest | |
| buildkitd-flags: --debug | |
| - name: Login to GitHub Container Registry | |
| if: github.event_name != 'pull_request' | |
| uses: docker/[email protected] | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.PAT }} | |
| - name: Build and push | |
| id: docker_build | |
| uses: docker/[email protected] | |
| with: | |
| context: . | |
| file: ./Dockerfile | |
| pull: true | |
| push: ${{ github.event_name != 'pull_request' }} | |
| tags: ${{ steps.docker_meta.outputs.tags }} | |
| labels: | | |
| ${{ steps.docker_meta.outputs.labels }} | |
| org.opencontainers.image.title=DISCVRSeq Toolkit | |
| org.opencontainers.image.description=DISCVR-seq Toolkit is a diverse collection of tools for working with sequencing data, developed and maintained by the Bimber Lab, built using the GATK4 engine. |