Refactor SPI computation to handle species absent from regions #23
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| name: Build report | |
| on: | |
| push: | |
| branches: | |
| - main | |
| jobs: | |
| build_deploy: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v3 | |
| - name: Install quarto | |
| uses: quarto-dev/quarto-actions/setup@v2 | |
| with: | |
| tinytex: true | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: "4.1.2" | |
| # use-public-rspm: true | |
| - name: Install spatial dependencies | |
| run: sudo apt-get install libgdal-dev libproj-dev libgeos-dev libudunits2-dev netcdf-bin libharfbuzz-dev libfribidi-dev | |
| - uses: r-lib/actions/setup-renv@v2 | |
| with: | |
| cache-version: 1 | |
| - name: Render Quarto Project | |
| run: QUARTO_DENO_EXTRA_OPTIONS="--v8-flags=--max-old-space-size=8192" quarto render | |
| # - name: prepare deployment | |
| # run: | | |
| # mkdir docs | |
| # mv _site docs/ | |
| # if [ -d index_files ]; then | |
| # mv index_files docs/ | |
| # fi | |
| # touch docs/.nojekyll | |
| - name: Deploy gh_pages | |
| uses: JamesIves/github-pages-deploy-action@releases/v3 | |
| with: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| BRANCH: gh-pages | |
| FOLDER: _site | |
| SINGLE_COMMIT: true |