use skimage for reading psf tiff files #134
Workflow file for this run
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| # This workflows will upload a Python Package using Twine when a release is created | |
| # For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries | |
| # For pytest-qt related fixes: https://pytest-qt.readthedocs.io/en/latest/troubleshooting.html#github-actions | |
| name: tests | |
| on: | |
| pull_request: | |
| paths-ignore: | |
| - "**/README.md" | |
| push: | |
| paths-ignore: | |
| - "**/README.md" | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| env: | |
| DISPLAY: ":99.0" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| activate-environment: test | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge | |
| - name: Conda info | |
| run: conda info | |
| - name: Save conda location | |
| run: echo "python=$(which python)" >> "$GITHUB_ENV" | |
| - name: Install core | |
| timeout-minutes: 10 | |
| run: | | |
| conda install -y pyopencl pocl | |
| python --version | |
| pip install --upgrade pip setuptools wheel | |
| pip install --use-pep517 -e './core[testing]' | |
| - name: Lint core | |
| uses: ./.github/lint | |
| with: | |
| directory: core | |
| python: ${{ env.python }} | |
| - name: Test core | |
| run: pytest -v --cov=core --cov-report=xml core/ | |
| - uses: tlambert03/setup-qt-libs@v1 | |
| - name: Install plugin | |
| timeout-minutes: 10 | |
| run: | | |
| /sbin/start-stop-daemon --start --quiet --pidfile /tmp/custom_xvfb_99.pid --make-pidfile --background --exec /usr/bin/Xvfb -- :99 -screen 0 1920x1200x24 -ac +extension GLX | |
| pip install pytest-qt PyQt5 | |
| pip install -e './plugin[testing]' | |
| - name: Lint plugin | |
| uses: ./.github/lint | |
| with: | |
| directory: plugin | |
| python: ${{ env.python }} | |
| - name: Test plugin | |
| run: pytest -v --cov=plugin --cov-report=xml plugin | |
| - name: Coverage | |
| uses: codecov/codecov-action@v3 | |
| deploy: | |
| # this will run when you have tagged a commit, starting with "v*" | |
| # and requires that you have put your twine API key in your | |
| # github secrets (see readme for details) | |
| needs: [test] | |
| runs-on: ubuntu-latest | |
| if: contains(github.ref, 'tags') | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.x" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -U setuptools setuptools_scm wheel twine | |
| - name: Build and publish | |
| env: | |
| TWINE_USERNAME: __token__ | |
| TWINE_PASSWORD: ${{ secrets.TWINE_TOKEN }} | |
| run: | | |
| git tag | |
| python setup.py sdist bdist_wheel | |
| twine upload dist/* |