Correctly rescale the ROI

BioimageAnalysisCoreWEHI · Oct 2, 2024 · 88e210c · 88e210c
1 parent 6c6b5c2
commit 88e210c
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/plugin/napari_lattice/fields.py b/plugin/napari_lattice/fields.py
@@ -484,10 +484,11 @@ def _make_model(self) -> Optional[CropParams]:
         from lls_core.models.crop import Roi
 
         if self.fields_enabled.value:
+            deskew = self._get_deskew()
             rois = []
             for shape_layer in self.shapes.value:
                 for x in shape_layer.data:
-                    rois.append(Roi.from_array(x))
+                    rois.append(Roi.from_array(x / deskew.dy))
 
             return CropParams(
                 # Convert from the input image space to the deskewed image space