-
Notifications
You must be signed in to change notification settings - Fork 11
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
READER: Implement Aztec .cpr/.crc reader for EBSD data. (#27)
Signed-off-by: Michael Jackson <[email protected]>
- Loading branch information
1 parent
c8d33e2
commit 358e3ec
Showing
28 changed files
with
1,426 additions
and
29 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,112 @@ | ||
|
|
||
| #include "EbsdLib/IO/HKL/CprReader.h" | ||
| #include "EbsdLib/LaueOps/LaueOps.h" | ||
|
|
||
| #include <iostream> | ||
|
|
||
| namespace detail | ||
| { | ||
| // const std::string k_CprPath = "/Volumes/OWC_Express_1M2/DREAM3D_Troubleshoot_Data/Benjamin_Layer1/Layer1.cpr"; | ||
| const std::string k_CprPath = "/Users/Shared/Data/CPR_CRC_Test_Data/dg7kv5mcv3-1/dg7kv5mcv3-1/17NZ41B_untwinnedquartzsample.cpr"; | ||
|
|
||
| } // namespace detail | ||
|
|
||
| std::string ConvertLaueGroupToString(int idx) | ||
| { | ||
| switch(idx) | ||
| { | ||
| case 0: | ||
| return "Hexagonal_High"; | ||
| case 1: | ||
| return "Cubic_High"; | ||
| case 2: | ||
| return "Hexagonal_Low"; | ||
| case 3: | ||
| return "Cubic_Low"; | ||
| case 4: | ||
| return "Triclinic"; | ||
| case 5: | ||
| return "Monoclinic"; | ||
| case 6: | ||
| return "OrthoRhombic"; | ||
| case 7: | ||
| return "Tetragonal_Low"; | ||
| case 8: | ||
| return "Tetragonal_High"; | ||
| case 9: | ||
| return "Trigonal_Low"; | ||
| case 10: | ||
| return "Trigonal_High"; | ||
| case 11: | ||
| return "UnknownCrystalStructure"; | ||
| } | ||
| return "Undefined"; | ||
| } | ||
|
|
||
| // ----------------------------------------------------------------------------- | ||
| int main(int argc, char* argv[]) | ||
| { | ||
|
|
||
| // if(argc != 3) | ||
| // { | ||
| // std::cout << "Program .cpr and .crc files as input." << std::endl; | ||
| // return 1; | ||
| // } | ||
|
|
||
| CprReader reader; | ||
| reader.setFileName(detail::k_CprPath); | ||
| int error = reader.readHeaderOnly(); | ||
| if(error < 0) | ||
| { | ||
| std::cout << "Reading Header Failed: " << error << "\n"; | ||
| return 1; | ||
| } | ||
| // reader.printHeader(std::cout); | ||
| // Write out a compatible DREAM3D "Ensemble" File | ||
| auto phases = reader.getPhaseVector(); | ||
| std::cout << "[EnsembleInfo]\n" | ||
| << "Number_Phases=" << phases.size() << std::endl; | ||
| size_t idx = 0; | ||
| for(const auto& phase : phases) | ||
| { | ||
| std::cout << std::endl; | ||
| std::cout << "[" << ++idx << "]\n" | ||
| << "CrystalStructure=" << ConvertLaueGroupToString(phase->determineOrientationOpsIndex()) << "\n" | ||
| << "PhaseType=PrimaryPhase\n"; | ||
| } | ||
|
|
||
| std::cout << "\n\nField Names\n"; | ||
| auto fieldParsers = reader.createFieldParsers(detail::k_CprPath); | ||
| for(const auto& parser : fieldParsers) | ||
| { | ||
| std::cout << parser.FieldDefinition.FieldName << "\n"; | ||
| } | ||
|
|
||
| error = reader.readFile(); | ||
| if(error < 0) | ||
| { | ||
| std::cout << reader.getErrorMessage() << error << "\n"; | ||
| return 2; | ||
| } | ||
|
|
||
| // Dump all the data to the command line | ||
| // std::cout << "Phase,Bands,Error,Euler1,Euler2,Euler3,MAD,BC,BS\n"; | ||
| // uint8_t* phasePtr = reader.getPhasePointer(); | ||
| // uint8_t* bandsPtr = reader.getBandCountPointer(); | ||
| // uint8_t* errorPtr = reader.getErrorPointer(); | ||
| // float* phi1Ptr = reader.getEuler1Pointer(); | ||
| // float* phiPtr = reader.getEuler2Pointer(); | ||
| // float* phi2Ptr = reader.getEuler3Pointer(); | ||
| // float* madPtr = reader.getMeanAngularDeviationPointer(); | ||
| // uint8_t* bcPtr = reader.getBandContrastPointer(); | ||
| // uint8_t* bsPtr = reader.getBandSlopePointer(); | ||
| // | ||
| // size_t numScanPoints = reader.getNumberOfElements(); | ||
| // for(size_t i = 0; i < numScanPoints; i++) | ||
| // { | ||
| // std::cout << static_cast<int>(phasePtr[i]) << "," << static_cast<int>(bandsPtr[i]) << "," << static_cast<int>(errorPtr[i]) << "," << phi1Ptr[i] << "," << phiPtr[i] << "," << phi2Ptr[i] << "," | ||
| // << madPtr[i] << "," << static_cast<int>(bcPtr[i]) << "," << static_cast<int>(bsPtr[i]) << std::endl; | ||
| // } | ||
|
|
||
| return 0; | ||
| } |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Oops, something went wrong.