Debugging

MultiObj/.classpath

@@ -1,9 +1,18 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <classpath>
-	<classpathentry kind="src" path="src"/>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
-	<classpathentry kind="lib" path="C:/Users/charl/Google Drive/CES5/CS547/opt4j-3.1.4/opt4j-3.1.4/lib/guice-4.0-beta5.jar"/>
-	<classpathentry kind="lib" path="C:/Users/charl/Google Drive/CES5/CS547/opt4j-3.1.4/opt4j-3.1.4/lib/guice-multibindings-4.0-beta5.jar"/>
-	<classpathentry kind="lib" path="C:/Users/charl/Google Drive/CES5/CS547/opt4j-3.1.4/opt4j-3.1.4/lib/opt4j-core-3.1.4.jar"/>
-	<classpathentry kind="output" path="bin"/>
+	<classpathentry kind="src" output="target/classes" path="src">
+		<attributes>
+			<attribute name="optional" value="true"/>
+			<attribute name="maven.pomderived" value="true"/>
+		</attributes>
+	</classpathentry>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
+		<attributes>
+			<attribute name="maven.pomderived" value="true"/>
+		</attributes>
+	</classpathentry>
+	<classpathentry kind="lib" path="C:/Users/charl/Desktop/opt4j-3.1.4/opt4j-3.1.4/lib/guice-4.0-beta5.jar"/>
+	<classpathentry kind="lib" path="C:/Users/charl/Desktop/opt4j-3.1.4/opt4j-3.1.4/lib/opt4j-core-3.1.4.jar"/>
+	<classpathentry kind="lib" path="C:/Users/charl/Desktop/opt4j-3.1.4/opt4j-3.1.4/lib/guice-multibindings-4.0-beta5.jar"/>
+	<classpathentry kind="output" path="target/classes"/>
 </classpath>

MultiObj/.gitignore

@@ -1 +1,2 @@
 /bin/
+/target/

MultiObj/.settings/org.eclipse.jdt.core.prefs

@@ -8,4 +8,5 @@ org.eclipse.jdt.core.compiler.debug.localVariable=generate
 org.eclipse.jdt.core.compiler.debug.sourceFile=generate
 org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
 org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
+org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
 org.eclipse.jdt.core.compiler.source=1.8

MultiObj/src/Constants.java

@@ -9,5 +9,6 @@ public class Constants {
 	public static final int COST_RATIO = 0;
 	public static final String FILE_NAME = "nrp1.txt";
 	public static final Boolean DEBUG = false;
+	public static final Boolean DEBUG_SCORES = true;
 
 }

MultiObj/src/Customer.java

@@ -5,7 +5,6 @@ public class Customer {
 
 	private int profit = 0;
 	private int Numrequests = 0;
-	private int customerLabel = 0;
 	private List<Integer> reqList = new ArrayList<Integer>();
 
 	/**
@@ -19,7 +18,6 @@ public Customer(int profit, int Numrequests, List<Integer> reqList, int customer
 		this.setProfit(profit);
 		this.setNumRequests(Numrequests);
 		this.setReqList(reqList);
-		this.setCustomerLabel(customerLabel);
 	}
 
 	/**
@@ -29,14 +27,6 @@ public Customer() {
 
 	}
 
-	public int getCustomerLabel() {
-		return customerLabel;
-	}
-
-	public void setCustomerLabel(int customerLabel) {
-		this.customerLabel = customerLabel;
-	}
-
 	public int getProfit() {
 		return profit;
 	}

MultiObj/src/FileParser.java

@@ -1,6 +1,9 @@
 import java.io.BufferedReader;
+import java.io.File;
 import java.io.FileReader;
 import java.io.IOException;
+import java.io.InputStream;
+import java.io.InputStreamReader;
 import java.util.ArrayList;
 import java.util.Arrays;
 import java.util.List;
@@ -22,19 +25,23 @@ public class FileParser {
 	public List<Integer> IDReqA = new ArrayList<Integer>();
 	public List<Integer> IDReqB = new ArrayList<Integer>();
 	public List<Requirements> level = new ArrayList<Requirements>();
+	public List<Integer> allCosts = new ArrayList<Integer>();
 
 	/**
 	 * Parsing the file into something more useful
+	 * 
+	 * @return
 	 */
-	public void parseFile() {
+	public NRP parseFile() {
 
 		BufferedReader br = null;
 		String currentLine;
 		int counter = 0;
 		int customerCount = 0;
 
 		try {
-			br = new BufferedReader(new FileReader(Constants.FILE_NAME));
+			File file = new File("C:/Users/charl/Desktop/nrp1.txt");
+			br = new BufferedReader(new FileReader(file));
 			while ((currentLine = br.readLine()) != null) {
 				counter++; // Skips line 0
 				if (counter == 1) {
@@ -48,18 +55,22 @@ public void parseFile() {
 						List<String> tokensList = new ArrayList<String>(Arrays.asList(tokens));
 						if (tokens.length > 1) {
 							// save as whatever
-							System.out.println(currentLine + " is current line");
-							System.out.println(tokensList.size() + " is size");
+							if (Constants.DEBUG) {
+								System.out.println(currentLine + " is current line");
+								System.out.println(tokensList.size() + " is size");
+							}
 							Requirements r = new Requirements(tokensList.size(), tokensList, countBoop);
 							level.add(r);
-							countBoop++; // Just to add level to Requirements
-											// object
+							addtoTotalCost(tokensList);
+							countBoop++;
 						}
 						reqCounter--;
 
 					}
 					nrp.setRequirements(level);
-					System.out.println("should be num dependancies.. " + br.readLine());
+					if (Constants.DEBUG == true) {
+						System.out.println("should be num dependancies.. " + br.readLine());
+					}
 				}
 
 				// Go through all the ID's
@@ -73,12 +84,16 @@ public void parseFile() {
 				nrp.setIDReqB(IDReqB);
 
 				// Customer attributes
-				while (words > 2) {
+				while (words > 2 && words < 14) {
+					/**
+					 * May need to change the < value depending on dataset
+					 */
 					customerCount++;
 					customerAttributeExtraction(customerCount, currentLine);
 					words = 0;
 				}
 				nrp.setCustomers(customersList);
+
 			}
 			nrp.setNumCustomers(customerCount);
 
@@ -90,6 +105,16 @@ public void parseFile() {
 			e.printStackTrace();
 		}
 		debug(); // Make sure everything has went into the correct objects
+
+		return nrp;
+	}
+
+	private void addtoTotalCost(List<String> annoyingList) {
+		for (String n : annoyingList) {
+			int nm = Integer.parseInt(n);
+			allCosts.add(nm);
+			nrp.setAllCosts(allCosts);
+		}
 	}
 
 	/**
@@ -110,16 +135,19 @@ private void IDExtraction(String currentLine) {
 	private void customerAttributeExtraction(int customerCount, String currentLine) {
 		// Just to keep track of the right things..
 		Customer customer = new Customer();
-		customer.setCustomerLabel(customerCount);
 
 		// Split line into different attributes
 		String[] tokens = currentLine.split("\\s+");
 		customer.setProfit(Integer.parseInt(tokens[0]));
 		customer.setNumRequests(Integer.parseInt(tokens[1]));
 		String[] subTokens = Arrays.copyOfRange(tokens, 2, tokens.length);
 		List<Integer> reqList = new ArrayList<Integer>();
+
 		for (String s : subTokens) {
 			reqList.add(Integer.parseInt(s));
+			if (Constants.DEBUG == true) {
+				System.out.println("bapitty boopity: " + Integer.parseInt(s));
+			}
 		}
 		customer.setReqList(reqList);
 		customersList.add(customer);
@@ -137,11 +165,6 @@ private void debug() {
 			System.out.println(nrp.getNumCustomers() + " is num customers in object");
 			System.out.println(nrp.getNumReq() + "is number requirements");
 
-			System.out.println("customers list: ");
-			for (Customer c : nrp.getCustomers()) {
-				System.out.println(c.getCustomerLabel());
-			}
-
 			System.out.println("Requirements A list");
 			for (Integer s : nrp.getIDReqA()) {
 				System.out.println(s);
@@ -159,6 +182,11 @@ private void debug() {
 				System.out.println(n.getLevel() + " : is level ");
 			}
 
+			System.out.println("aw the costs");
+			for (Integer n : allCosts) {
+				System.out.println(n);
+			}
+
 		}
 	}
 
@@ -174,7 +202,7 @@ public int tokenizeShit(String currentLine) {
 		int total = tokens.length;
 		return total;
 	}
-
+	
 	/**
 	 * May need to put each different object into different methods Still need
 	 * to add every parsed bit into customer objects and such and also link the
@@ -184,7 +212,14 @@ public int tokenizeShit(String currentLine) {
 	 * @throws IOException
 	 */
 	public static void main(String[] args) throws IOException {
+
 		FileParser fp = new FileParser();
-		fp.parseFile();
+		System.out.println("boop");
+		NRP nrp = fp.parseFile();
+
+		for (Customer n : nrp.getCustomers()) {
+			System.out.println(n.getProfit() + " " + n.getReqList());
+		}
+
 	}
 }

MultiObj/src/NRP.java

@@ -25,6 +25,7 @@ public class NRP {
 	private List<Integer> IDReqB = new ArrayList<Integer>();
 	private List<Customer> customers = new ArrayList<Customer>();
 	private List<Requirements> requirements = new ArrayList<Requirements>();
+	private List<Integer> allCosts = new ArrayList<Integer>();
 
 	/**
 	 * Basically I am lazy and would like the option to make this in any
@@ -190,4 +191,12 @@ public void setRequirements(List<Requirements> level) {
 		this.requirements = level;
 	}
 
+	public List<Integer> getAllCosts() {
+		return allCosts;
+	}
+
+	public void setAllCosts(List<Integer> allCosts) {
+		this.allCosts = allCosts;
+	}
+
 }

MultiObj/src/NRPBOOPCreator.java

@@ -0,0 +1,23 @@
+
+import java.util.Random;
+import org.opt4j.core.problem.Creator;
+import org.opt4j.core.genotype.BooleanGenotype;
+
+/**
+ * Create instances of a solution
+ * 
+ * @author Charlotte Wilson
+ *
+ */
+public class NRPBOOPCreator implements Creator<BooleanGenotype> {
+	Random random = new Random();
+
+	public BooleanGenotype create() {
+		BooleanGenotype genotype = new BooleanGenotype();
+		/**
+		 * Need to change this to the same number of requirements?
+		 */
+		genotype.init(random, 140); //
+		return genotype;
+	}
+}

MultiObj/src/NRPBOOPDecoder.java

@@ -0,0 +1,23 @@
+
+import org.opt4j.core.problem.Decoder;
+import org.opt4j.core.genotype.BooleanGenotype;
+
+/**
+ * Changes Boolean phenotype to a string phenotype
+ * 
+ * @author Charlotte Wilson
+ *
+ */
+public class NRPBOOPDecoder implements Decoder<BooleanGenotype, String> {
+	public String decode(BooleanGenotype genotype) {
+		String phenotype = "";
+		for (int i = 0; i < genotype.size(); i++) {
+			// True for requirement is selected
+			if (genotype.get(i) == true)
+				phenotype += "1";
+			else
+				phenotype += "0";
+		}
+		return phenotype;
+	}
+}