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33 Open 43 Closed
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Issues list

use readthedocs style for mkdocs documentation Improvements or additions to documentation
#107 opened Mar 12, 2025 by kelly-sovacool
@kelly-sovacool
Updates from CHAMPAGNE: CLI & nxf options
#106 opened Mar 12, 2025 by kelly-sovacool
4 tasks
@kelly-sovacool
integration across all samples enhancement New feature or request
#104 opened Jan 24, 2025 by kelly-sovacool
1
unhelpful rmarkdown traceback bug Something isn't working
#99 opened Oct 30, 2024 by kelly-sovacool
6
use variables to set biowulf-specific paths in config bug Something isn't working
#97 opened Oct 25, 2024 by kelly-sovacool
zenodo DOI documentation Improvements or additions to documentation
#96 opened Oct 24, 2024 by kelly-sovacool
3 tasks
@kelly-sovacool
Prepare for biowulf release ccbrpipeliner/8
#92 opened Sep 10, 2024 by kelly-sovacool
1 of 3 tasks
11
Please increase time limit in the submit_slurm.sh file.
#91 opened Aug 29, 2024 by Krithika-Bhuvan
4
release SINCLAIR v0.3.0
#86 opened Jul 15, 2024 by kelly-sovacool
@kelly-sovacool @wong-nw
2
Change R Markdown output format from PDF to HTML bug Something isn't working high priority
#84 opened Jul 1, 2024 by kelly-sovacool
ENHANCEMENT: Additional species for cell cycle enhancement New feature or request
#79 opened Mar 4, 2024 by wong-nw
3 tasks
Documentation: Batch correction selection documentation Improvements or additions to documentation
#78 opened Feb 27, 2024 by wong-nw
@wong-nw
Documentation: Expected outputs and structure documentation Improvements or additions to documentation v1
#77 opened Feb 27, 2024 by wong-nw
@wong-nw
remap meta data to structured as meta.id, meta.group etc bug Something isn't working high priority
#76 opened Feb 26, 2024 by slsevilla
1
Split contrast and samplesheet into two scripts
#75 opened Feb 26, 2024 by slsevilla
run fastqc if input is fastq files
#74 opened Feb 26, 2024 by slsevilla
add mmul as species enhancement New feature or request
#72 opened Feb 26, 2024 by slsevilla
use containers instead of modules bug Something isn't working high priority testing testing pipeline
#69 opened Jan 24, 2024 by kelly-sovacool
1
@kelly-sovacool
6
Update to production Seurat5
#67 opened Jan 17, 2024 by slsevilla
1
@kelly-sovacool
Incorporate Monocle3 pseudotime analysis
#64 opened Dec 6, 2023 by Krithika-Bhuvan
1
Test Feature: Changing contrast manifest after full run
#63 opened Dec 6, 2023 by wong-nw
Run JoinLayers on objects after processing enhancement New feature or request
#60 opened Nov 13, 2023 by slsevilla
5 tasks
1
add email upon completion or error enhancement New feature or request
#56 opened Nov 9, 2023 by slsevilla
Formalize script for ATACSeq enhancement New feature or request
#46 opened Oct 11, 2023 by wong-nw 2024-02
@wong-nw
Batch Correction Report on new test data testing testing pipeline
#41 opened Sep 27, 2023 by slsevilla
2
ProTip! What’s not been updated in a month: updated:<2025-02-17.