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Issues list

use readthedocs style for mkdocs documentation Improvements or additions to documentation
#107 opened Mar 12, 2025 by kelly-sovacool
Updates from CHAMPAGNE: CLI & nxf options
#106 opened Mar 12, 2025 by kelly-sovacool
4 tasks
integration across all samples enhancement New feature or request
#104 opened Jan 24, 2025 by kelly-sovacool
unhelpful rmarkdown traceback bug Something isn't working
#99 opened Oct 30, 2024 by kelly-sovacool
use variables to set biowulf-specific paths in config bug Something isn't working
#97 opened Oct 25, 2024 by kelly-sovacool
zenodo DOI documentation Improvements or additions to documentation
#96 opened Oct 24, 2024 by kelly-sovacool
3 tasks
ENHANCEMENT: Additional species for cell cycle enhancement New feature or request
#79 opened Mar 4, 2024 by wong-nw
3 tasks
Documentation: Batch correction selection documentation Improvements or additions to documentation
#78 opened Feb 27, 2024 by wong-nw
Documentation: Expected outputs and structure documentation Improvements or additions to documentation v1
#77 opened Feb 27, 2024 by wong-nw
run fastqc if input is fastq files
#74 opened Feb 26, 2024 by slsevilla
add mmul as species enhancement New feature or request
#72 opened Feb 26, 2024 by slsevilla
use containers instead of modules bug Something isn't working high priority testing testing pipeline
#69 opened Jan 24, 2024 by kelly-sovacool
Update to production Seurat5
#67 opened Jan 17, 2024 by slsevilla
Run JoinLayers on objects after processing enhancement New feature or request
#60 opened Nov 13, 2023 by slsevilla
5 tasks
add email upon completion or error enhancement New feature or request
#56 opened Nov 9, 2023 by slsevilla
Formalize script for ATACSeq enhancement New feature or request
#46 opened Oct 11, 2023 by wong-nw 2024-02
Batch Correction Report on new test data testing testing pipeline
#41 opened Sep 27, 2023 by slsevilla
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