Reference Gene Modules
- Three reference gene modules for the hantavirus segmented genome: Small (nucleocapsid), Medium (glycoprotein), Large (RNA-dependent RNA polymerase)
- Curated metadata and fasta files of aligned sequences (sourced from GenBank/ViPR)
- Metadata files include strain classification of hantaviruses (SNV, NYV, SEOV, etc)
- Fasta files include clean and complete gene coding sequence (CDS); stop codon removed
- NCBI Accession ID is used to match the metadata with the sequence data
- The same Virus ID is assigned to Small, Medium and Large gene sequences belonging to the same virus
- Reference collection dates: 1982 – 2017
- Default view is 2D Network: Uses TN93 substitution model to compute genetic distances, then builds a molecular network
- Default genetic distance: 0.15 - 0.20 (hantavirus strain-specific clusters)
- Build and customize dashboards with additional view options, including Map and Phylogenetic Tree views
2D Network
Phylogenetic Tree
Phylogenetic Tree Dashboard
Map Dashboard
Transmission Networks
