sync: update rextendr #143
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| name: Tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| # cargo error handling is wrapped by ci-cargo, for simplicity and better logging. | |
| # To use ci-cargo in a step, source ci-cargo.ps1 (using `. ./ci-cargo.ps`, note the extra dot in front). | |
| # ci-cargo does not handle correctly -- separator, so wrap it in quotes ('--') | |
| # A special named parameter called `ActionName` can be used to set the name of current ci-cargo action, | |
| # used as `ci-cargo .... -ActionName "Called for documentation purposes"`. | |
| jobs: | |
| # All tests under this job are run with pre-computed libR-sys bindings. | |
| tests_no_bindgen: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (R-${{ matrix.config.r }} rust-${{ matrix.config.rust-version }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - { os: windows-latest, r: 'release', rust-version: 'stable-msvc', rtools-version: '43' } | |
| - { os: windows-latest, r: 'devel', rust-version: 'stable-msvc', rtools-version: '44' } | |
| - { os: windows-latest, r: 'oldrel', rust-version: 'stable-msvc', rtools-version: '42' } | |
| - { os: macOS-latest, r: 'release', rust-version: 'stable' } | |
| # - {os: macOS-latest, r: 'release', rust-version: 'nightly'} | |
| # - {os: macOS-latest, r: 'devel', rust-version: 'stable'} | |
| # - {os: macOS-latest, r: 'oldrel', rust-version: 'stable'} | |
| - { os: ubuntu-latest, r: 'release', rust-version: 'stable', check_fmt: true } | |
| - { os: ubuntu-latest, r: 'release', rust-version: 'nightly' } | |
| # R-devel requires LD_LIBRARY_PATH | |
| - { os: ubuntu-latest, r: 'devel', rust-version: 'stable' } | |
| - { os: ubuntu-latest, r: 'oldrel', rust-version: 'stable' } | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| # This environment variable enables support for pseudo multi-target cargo builds. | |
| # Current stable Rust does not support multi-targeting, | |
| # see https://github.com/rust-lang/cargo/issues/8176 | |
| # The variable is treated as a comma-separated list of valid Rust targets. | |
| # 'default' value emits no '--target' flag. | |
| # E.g.: BUILD_TARGETS=i686-pc-windows-gnu,x86_64-pc-windows-gnu builds two times, | |
| # each time providing '--target=*-pc-windows-gnu' flag to cargo. | |
| BUILD_TARGETS: default | |
| # PowerShell core is available on all platforms and can be used to unify scripts | |
| defaults: | |
| run: | |
| shell: pwsh | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: 'true' | |
| - name: Set up Rust | |
| uses: dtolnay/rust-toolchain@master | |
| with: | |
| toolchain: ${{ matrix.config.rust-version }} | |
| components: rustfmt, clippy | |
| - name: Install cargo-expand | |
| uses: dtolnay/install@master | |
| if: startsWith(runner.os, 'Windows') != true | |
| with: | |
| crate: cargo-expand | |
| # https://github.com/dtolnay/install/issues/12 | |
| - name: Install cargo-expand (dtolnay/install#12 workaround) | |
| if: startsWith(runner.os, 'Windows') | |
| run: cargo install cargo-expand | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| rtools-version: ${{ matrix.config.rtools-version }} | |
| # TODO: enable RSPM when all the packages are available | |
| use-public-rspm: true | |
| - name: Set up Pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Configure Windows | |
| if: startsWith(runner.os, 'Windows') | |
| run: | | |
| $rtools_home = "C:\rtools${{ matrix.config.rtools-version }}" | |
| # c.f. https://github.com/wch/r-source/blob/f1501504df8df1668a57d3a1b6f80167f24441d3/src/library/profile/Rprofile.windows#L70-L71 | |
| echo "${rtools_home}\x86_64-w64-mingw32.static.posix\bin" | Out-File -FilePath $env:GITHUB_PATH -Encoding utf8 -Append ; | |
| echo "${rtools_home}\usr\bin" | Out-File -FilePath $env:GITHUB_PATH -Encoding utf8 -Append ; | |
| echo "$(Rscript.exe -e 'cat(normalizePath(R.home()))')\bin\x64" | Out-File -FilePath $env:GITHUB_PATH -Encoding utf8 -Append ; | |
| # Add target | |
| rustup target add x86_64-pc-windows-gnu | |
| echo "BUILD_TARGETS=x86_64-pc-windows-gnu" | Out-File -FilePath $env:GITHUB_ENV -Encoding utf8 -Append ; | |
| # The following lines add two tweaks: | |
| # | |
| # 1. Change the linker name to "x86_64-w64-mingw32.static.posix-gcc.exe". | |
| # 2. Add empty libgcc_s.a and libgcc_eh.a, and add them to the compiler's | |
| # library search paths via `LIBRARY_PATH` envvar. | |
| # | |
| # The first tweak is needed because Rtools42 doesn't contain | |
| # "x86_64-w64-mingw32-gcc," which `rustc` uses as the default linker | |
| # for the `x86_64-pc-windows-gnu` target. | |
| # | |
| # If we use the Rtools' toolchain, the second tweak is also required. | |
| # `rustc` adds `-lgcc_eh` and `-lgcc_s` flags to the compiler, but | |
| # Rtools' GCC doesn't have `libgcc_eh` or `libgcc_s` due to the | |
| # compilation settings. So, in order to please the compiler, we need | |
| # to add empty `libgcc_eh` or `libgcc_s` to the library search paths. | |
| # | |
| # For more details, please refer to https://github.com/r-windows/rtools-packages/blob/2407b23f1e0925bbb20a4162c963600105236318/mingw-w64-gcc/PKGBUILD#L313-L316 | |
| New-Item -Path libgcc_mock -Type Directory | |
| New-Item -Path libgcc_mock\libgcc_eh.a -Type File | |
| New-Item -Path libgcc_mock\libgcc_s.a -Type File | |
| New-Item -Path .cargo -ItemType Directory -Force | |
| $pwd_slash = echo "${PWD}" | % {$_ -replace '\\','/'} | |
| echo "LIBRARY_PATH=${pwd_slash}/libgcc_mock;$env:LIBRARY_PATH" | Out-File -FilePath $env:GITHUB_ENV -Encoding utf8 -Append | |
| @" | |
| [target.x86_64-pc-windows-gnu] | |
| linker = "x86_64-w64-mingw32.static.posix-gcc.exe" | |
| "@ | Out-File -FilePath .cargo/config.toml -Encoding utf8 -Append ; | |
| env: | |
| RUST_TOOLCHAIN: ${{ matrix.config.rust-version }} | |
| # This is required for ubuntu r-devel | |
| # 'Del alias:R' removes 'R' alias which prevents running R | |
| - name: Configure Linux | |
| if: startsWith(runner.os, 'linux') | |
| run: | | |
| Del alias:R | |
| echo "LD_LIBRARY_PATH=$(R -s -e 'cat(normalizePath(R.home()))')/lib" | Out-File -FilePath $env:GITHUB_ENV -Encoding utf8 -Append | |
| # Check code formatting. As this doesn't depend on the platform, do this only on one platform. | |
| - name: Check code formatting | |
| if: matrix.config.check_fmt | |
| run: cargo fmt -- --check | |
| # For each target in the BUILD_TARGETS comma-separated list, run cargo build with appropriate target | |
| # Required by Windows builds, does not affect other platforms | |
| - name: Build | |
| run: | | |
| . ./ci-cargo.ps1 | |
| foreach($target in ($env:BUILD_TARGETS).Split(',')) { | |
| ci-cargo build $(if($target -ne 'default') {"--target=$target"} ) -ActionName "Building for $target target" | |
| } | |
| # For each target in the BUILD_TARGETS comma-separated list, run cargo test with appropriate target | |
| # Required by Windows builds, does not affect other platforms | |
| # ! ci-cargo requires '--' to be wrapped in quotes (passed as an explicit string) | |
| - name: Run tests | |
| run: | | |
| . ./ci-cargo.ps1 | |
| foreach($target in ($env:BUILD_TARGETS).Split(',')) { | |
| # Note: no feature is specified, which means such features like graphics, serde, ndarray, and num-complex are not tested here. | |
| ci-cargo test $(if($target -ne 'default') {"--target=$target"} ) '--' --nocapture -ActionName "Testing for $target target" | |
| } | |
| env: | |
| LIBRARY_PATH: ${{ env.LIBRARY_PATH }} | |
| RUST_BACKTRACE: 1 | |
| # c.f. https://github.com/actions/checkout#checkout-multiple-repos-side-by-side | |
| - name: Obtain 'rextendr' | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: 'true' | |
| repository: extendr/rextendr | |
| path: ./tests/rextendr | |
| - name: Install dependencies for extendrtests and rcmdcheck | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| cache-version: 4 | |
| working-directory: tests/extendrtests | |
| extra-packages: any::rcmdcheck | |
| - name: Install dependencies for rextendr | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| cache-version: 4 | |
| working-directory: tests/rextendr | |
| # TODO: allow warnings on oldrel (cf., https://stat.ethz.ch/pipermail/r-package-devel/2023q2/009229.html) | |
| - name: Check R version | |
| id: error-on | |
| run: | | |
| output <- Sys.getenv("GITHUB_OUTPUT") | |
| if (.Platform$OS.type == "windows" && getRversion() < "4.3.0") { | |
| cat('level=error', file = output, append = TRUE) | |
| } else { | |
| cat('level=warning', file = output, append = TRUE) | |
| } | |
| shell: Rscript {0} | |
| - name: Run R integration tests using {extendrtests} and `cargo extendr r-cmd-check` | |
| run: | | |
| cargo extendr r-cmd-check --error-on ${{ steps.error-on.outputs.level }} --check-dir extendrtests_check | |
| # With https://github.com/extendr/rextendr/pull/31 | |
| # rextendr can be configured using environment variables. | |
| # 'patch.crates_io' is used to point libraries to local copies of | |
| # extendr-api and extendr-macros, so rextendr tests current version of extendr-* | |
| - name: Prepare for R integration tests using {rextendr} | |
| id: rextendr_check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| run: | | |
| cat("::group::Preparing 'rextendr'\n") | |
| patch.crates_io <- | |
| paste( | |
| paste0( | |
| "extendr-api = { path = \"", | |
| normalizePath(file.path(getwd(), "extendr-api"), winslash = "/"), | |
| "\" }"), | |
| paste0( | |
| "extendr-macros = { path = \"", | |
| normalizePath(file.path(getwd(), "extendr-macros"), winslash = "/"), | |
| "\" }"), | |
| # uncomment this line when we need to depend on the dev version of libR-sys | |
| #'libR-sys = { git = "https://github.com/extendr/libR-sys" }', | |
| # use the embedded libR-sys submodule | |
| paste0( | |
| "libR-sys = { path = \"", | |
| normalizePath(file.path(getwd(), "libR-sys"), winslash = "/"), | |
| "\" }"), | |
| sep = ";") | |
| patch.crates_io <- paste0("REXTENDR_PATCH_CRATES_IO=", patch.crates_io) | |
| github_env_file <- Sys.getenv("GITHUB_ENV") | |
| cat(patch.crates_io, file = github_env_file, append = TRUE) | |
| cat("::endgroup::\n") | |
| shell: Rscript {0} | |
| - name: Run R integration tests using {rextendr} | |
| env: | |
| REXTENDR_SKIP_DEV_TESTS: 1 | |
| uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| args: 'c("--no-manual", "--as-cran", "--force-multiarch")' | |
| working-directory: 'tests/rextendr' | |
| check-dir: '"rextendr_check"' | |
| error-on: '"${{ steps.error-on.outputs.level }}"' | |
| # All tests under this job are run with R devel and freshly generated bindings. | |
| # Run bindgen tests without cross-compilation. | |
| # Cross-compilation prevents from running doc tests | |
| # if toolchain does not match target (Windows x86_64/i686 case), see | |
| # > https://github.com/rust-lang/rust/issues/64245 | |
| # > https://github.com/rust-lang/cargo/issues/7040 | |
| bindgen: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} w/ bindgen (R-${{ matrix.config.r }} rust-${{ matrix.config.rust-version }} ${{join(matrix.config.rust-targets, ',')}}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - { os: ubuntu-latest, r: 'devel', rust-version: 'stable' } | |
| - { os: macOS-latest, r: 'devel', rust-version: 'stable' } | |
| - { os: windows-latest, r: 'release', rust-version: 'stable-msvc', rust-targets: [ 'x86_64-pc-windows-gnu' ], rtools-version: '43' } | |
| - { os: windows-latest, r: 'devel', rust-version: 'stable-msvc', rust-targets: [ 'x86_64-pc-windows-gnu' ], rtools-version: '44' } | |
| # When the MSVC target is used, since it's cross-compilation from MSVC | |
| # to GNU, the doc tests are usually skipped. Adding `-Zdoctest-xcompile` | |
| # lets the doctests run, which accordingly require the nightly toolchain. | |
| - { os: windows-latest, r: 'release', rust-version: 'nightly-msvc', rust-targets: [ 'x86_64-pc-windows-gnu' ], rtools-version: '43', extra-args: [ '-Zdoctest-xcompile' ] } | |
| - { os: windows-latest, r: 'oldrel', rust-version: 'nightly-msvc', rust-targets: [ 'x86_64-pc-windows-gnu' ], rtools-version: '42', extra-args: [ '-Zdoctest-xcompile' ] } | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| # PowerShell core is available on all platforms and can be used to unify scripts | |
| defaults: | |
| run: | |
| shell: pwsh | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: 'true' | |
| - name: Set up Rust | |
| uses: dtolnay/rust-toolchain@master | |
| with: | |
| toolchain: ${{ matrix.config.rust-version }} | |
| # 1. Update rustup | |
| # 2. For each target add respective toolchain & | |
| # update target for that toolchain | |
| - name: Set up Rust targets | |
| run: | | |
| $targets = $env:RUST_TARGETS.Split(',') | |
| foreach ($target in $targets) { | |
| echo "::group::Setting up $env:RUST_TOOLCHAIN $target" | |
| if ($target -ne '') { | |
| rustup target add $target --toolchain "$env:RUST_TOOLCHAIN" | |
| if(!$?) { | |
| throw "Last exit code $LASTEXITCODE" | |
| } | |
| } | |
| echo "::endgroup::" | |
| } | |
| env: | |
| RUST_TARGETS: ${{ join(matrix.config.rust-targets, ',') }} | |
| RUST_TOOLCHAIN: ${{ matrix.config.rust-version }} | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| rtools-version: ${{ matrix.config.rtools-version }} | |
| use-public-rspm: true | |
| windows-path-include-mingw: false | |
| - name: Configure Windows | |
| if: startsWith(runner.os, 'Windows') | |
| run: | | |
| $rtools_home = "C:\rtools${{ matrix.config.rtools-version }}" | |
| echo "::group::Setting up x86_64" | |
| # c.f. https://github.com/wch/r-source/blob/f1501504df8df1668a57d3a1b6f80167f24441d3/src/library/profile/Rprofile.windows#L70-L71 | |
| echo "${rtools_home}\x86_64-w64-mingw32.static.posix\bin" | Out-File -FilePath $env:GITHUB_PATH -Encoding utf8 -Append ; | |
| echo "${rtools_home}\usr\bin" | Out-File -FilePath $env:GITHUB_PATH -Encoding utf8 -Append ; | |
| echo "$(Rscript.exe -e 'cat(normalizePath(R.home()))')\bin\x64" | Out-File -FilePath $env:GITHUB_PATH -Encoding utf8 -Append | |
| echo "::endgroup::" | |
| # The following lines add two tweaks: | |
| # | |
| # 1. Change the linker name to "x86_64-w64-mingw32.static.posix-gcc.exe". | |
| # 2. Add empty libgcc_s.a and libgcc_eh.a, and add them to the compiler's | |
| # library search paths via `LIBRARY_PATH` envvar. | |
| # | |
| # The first tweak is needed because Rtools42 doesn't contain | |
| # "x86_64-w64-mingw32-gcc," which `rustc` uses as the default linker | |
| # for the `x86_64-pc-windows-gnu` target. | |
| # | |
| # If we use the Rtools' toolchain, the second tweak is also required. | |
| # `rustc` adds `-lgcc_eh` and `-lgcc_s` flags to the compiler, but | |
| # Rtools' GCC doesn't have `libgcc_eh` or `libgcc_s` due to the | |
| # compilation settings. So, in order to please the compiler, we need | |
| # to add empty `libgcc_eh` or `libgcc_s` to the library search paths. | |
| # | |
| # For more details, please refer to https://github.com/r-windows/rtools-packages/blob/2407b23f1e0925bbb20a4162c963600105236318/mingw-w64-gcc/PKGBUILD#L313-L316 | |
| New-Item -Path libgcc_mock -Type Directory | |
| New-Item -Path libgcc_mock\libgcc_eh.a -Type File | |
| New-Item -Path libgcc_mock\libgcc_s.a -Type File | |
| New-Item -Path .cargo -ItemType Directory -Force | |
| $pwd_slash = echo "${PWD}" | % {$_ -replace '\\','/'} | |
| echo "LIBRARY_PATH=${pwd_slash}/libgcc_mock;$env:LIBRARY_PATH" | Out-File -FilePath $env:GITHUB_ENV -Encoding utf8 -Append | |
| @" | |
| [target.x86_64-pc-windows-gnu] | |
| linker = "x86_64-w64-mingw32.static.posix-gcc.exe" | |
| "@ | Out-File -FilePath .cargo/config.toml -Encoding utf8 -Append ; | |
| env: | |
| RUST_TARGETS: ${{ join(matrix.config.rust-targets, ',') }} | |
| - name: Configure Linux | |
| if: startsWith(runner.os, 'linux') | |
| run: | | |
| Del alias:R | |
| echo "LD_LIBRARY_PATH=$(R -s -e 'cat(normalizePath(R.home()))')/lib" | Out-File -FilePath $env:GITHUB_ENV -Encoding utf8 -Append | |
| # 1. Retrieve targets | |
| # 2. Retrieve 'libcalng' paths | |
| # 3. For each target run | |
| # 3.1 Select correct $target & $toolchain | |
| # 3.x Run build commands, checking for errors, providing explicit toolchain & target | |
| - name: Build | |
| run: | | |
| echo $LIBRARY_PATH | |
| echo $env:LIBRARY_PATH | |
| . ./ci-cargo.ps1 | |
| $targets = $env:BUILD_TARGETS.Split(',') | |
| $toolchain = $env:RUST_TOOLCHAIN | |
| $itt = 0..($targets.Length - 1) | |
| foreach($i in $itt) { | |
| if ($targets[$i] -eq "") { | |
| $target = 'default' | |
| } | |
| else { | |
| $target = $targets[$i] | |
| } | |
| ci-cargo +$toolchain build --manifest-path extendr-api/Cargo.toml --features tests-all $(if($target -ne 'default') {"--target=$target"} ) -ActionName "Build extendr-api for $toolchain/$target" | |
| ci-cargo +$toolchain build --manifest-path extendr-engine/Cargo.toml --features tests-all $(if($target -ne 'default') {"--target=$target"} ) -ActionName "Build extendr-engine for $toolchain/$target" | |
| } | |
| env: | |
| BUILD_TARGETS: ${{ join(matrix.config.rust-targets, ',') }} | |
| RUST_TOOLCHAIN: ${{ matrix.config.rust-version }} | |
| # Identical to the build process, but running more test commands | |
| # ! ci-cargo requires '--' to be wrapped in quotes (passed as an explicit string) | |
| - name: Run tests | |
| run: | | |
| . ./ci-cargo.ps1 | |
| $targets = $env:BUILD_TARGETS.Split(',') | |
| $toolchain = $env:RUST_TOOLCHAIN | |
| $itt = 0..($targets.Length - 1) | |
| foreach($i in $itt) { | |
| if ($targets[$i] -eq "") { | |
| $target = 'default' | |
| } | |
| else { | |
| $target = $targets[$i] | |
| } | |
| ci-cargo +$toolchain test --manifest-path extendr-engine/Cargo.toml --features tests-all $(if($target -ne 'default') {"--target=$target"} ) $env:EXTRA_ARGS '--' --nocapture -ActionName "Test extendr-engine \w tests-all for $target target" | |
| ci-cargo +$toolchain test --manifest-path extendr-api/Cargo.toml --features tests $(if($target -ne 'default') {"--target=$target"} ) $env:EXTRA_ARGS '--' --nocapture -ActionName "Test extendr-api \w tests for $target target" | |
| # graphics tests requires --test-threads=1 | |
| ci-cargo +$toolchain test graphics_tests:: --manifest-path extendr-api/Cargo.toml --features tests-graphics $(if($target -ne 'default') {"--target=$target"} ) $env:EXTRA_ARGS '--' --nocapture --test-threads=1 -ActionName "Test extendr-api \w graphics for $target target" | |
| ci-cargo +$toolchain test --manifest-path extendr-api/Cargo.toml --features tests-minimal $(if($target -ne 'default') {"--target=$target"} ) $env:EXTRA_ARGS '--' --nocapture -ActionName "Test extendr-api \w tests-minimal for $target target" | |
| ci-cargo +$toolchain test test_result_list --manifest-path extendr-api/Cargo.toml --features tests-minimal,result_list $(if($target -ne 'default') {"--target=$target"} ) $env:EXTRA_ARGS '--' --nocapture -ActionName "Test extendr-api \w tests-minimal for $target target with `result_list` feature" | |
| ci-cargo +$toolchain test test_result_condition --manifest-path extendr-api/Cargo.toml --features tests-minimal,result_condition $(if($target -ne 'default') {"--target=$target"} ) $env:EXTRA_ARGS '--' --nocapture -ActionName "Test extendr-api \w tests-minimal for $target target with `result_condition` feature" | |
| ci-cargo +$toolchain test --manifest-path extendr-macros/Cargo.toml $(if($target -ne 'default') {"--target=$target"} ) $env:EXTRA_ARGS '--' --nocapture -ActionName "Test extendr-macros for $target target" | |
| } | |
| env: | |
| BUILD_TARGETS: ${{ join(matrix.config.rust-targets, ',') }} | |
| RUST_TOOLCHAIN: ${{ matrix.config.rust-version }} | |
| EXTRA_ARGS: ${{ join(matrix.config.extra-args, ',') }} |