EDPRmodel is an implementation of the KNP continuity equations for a one-dimensional system containing two plus two compartments. The model is presented in Sætra et al., PLoS Computational Biology, 16(4), e1007661 (2020): An electrodiffusive, ion conserving Pinsky-Rinzel model with homeostatic mechanisms.
Clone or download the repo, navigate to the top directory of the repo and enter the following command in the terminal:
python setup.py installThe code was developed for Python 3.6.
The simulations folder includes example code showing how to run simulations. To reproduce the results presented in Sætra et al. 2020, see https://github.com/CINPLA/EDPRmodel_analysis.