This is the top level directory for the repository

https://github.com/CMUSchwartzLab/SCS_deconvolution

that contains software to solve several formulations of the problem of deconvolving bulk tumor data into subpopulations, as described in (Lei et al., in preparation)

Code and more information can be found in the subdirectory schwartzlab/LLSolver including a longer documentation file called schwartzlab/LLSolver/README.md.

Reference:

Haoyun Lei, Bochuan Lyu, E. Michael Gertz, Alejandro A. Schaffer, Xulian Shi, Kui Wu, Guibo Li, Liqin Xu, Yong Hou, Michael Dean, Russell Schwartz, Tumor Copy Number Deconvolution Integrating Bulk and Single-Cell Sequencing Data, in preparation.