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STEPS 5.0.3

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@jlallouette jlallouette released this 11 Nov 05:29
5.0.3
9d5faab
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Python API

  1. Added HDF5MultiFileReader to read simulation data from several HDF5 files at once.
  2. Simulation.toDB can now be called without a uid.
  3. Random number generators (RNG class) now have default constructor arguments

Bugfixes

  1. Improve behavior of stochastic paths (added in 5.0.1). Vesicles test more available sites on path, which reduces chance of vesicle becoming blocked if furthest site is unavailable.
  2. Fix rare vesicle surface diffusion crash for boost versions < 1.73 (issue was introduced in 5.0.2)
  3. Fix vesicles erroneously diffusing to different compartment (issue was introduced in 5.0.1)
  4. Fix compilation issues with mpi4py >= 4.0.0 and Open MPI < 5.0.0
  5. Fix DistMesh.intersect method computations failing under some conditions

Dependencies

  1. Updated the overlap library to d2a165e (development version)
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