Alevin-fry is a fast, accurate, and memory frugal quantification tool for preprocessing single-cell RNA-sequencing data. Detailed information can be found in the alevin-fry pre-print, and paper.
The pyroe package provides useful functions for analyzing single-cell or single-nucleus RNA-sequencing data using alevin-fry. The documentation for pyroe has its own dedicated website. Please visit the ReadTheDocs pyroe website here.