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Merge pull request #142 from COMBINE-lab/dev #138

Merge pull request #142 from COMBINE-lab/dev

Merge pull request #142 from COMBINE-lab/dev #138

Triggered via push July 1, 2024 17:34
Status Failure
Total duration 5m 45s
Artifacts
Matrix: check_formatting
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3 errors and 17 warnings
check_formatting (macos-latest)
The process '/Users/runner/miniconda3/condabin/mamba' failed with exit code 1
check_formatting (ubuntu-latest)
The job was canceled because "macos-latest" failed.
check_formatting (ubuntu-latest)
The operation was canceled.
check_formatting (macos-latest)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/[email protected], actions-rs/toolchain@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
check_formatting (macos-latest)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/[email protected], actions-rs/toolchain@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
check_formatting (macos-latest)
LibMambaUnsatisfiableError: Encountered problems while solving: - nothing provides requested bioconda::salmon >=1.10.2 - nothing provides requested bioconda::piscem >=0.9.0 - nothing provides requested bioconda::gffread >=0.12.7 - nothing provides requested bioconda::bedtools >=2.30.0 - nothing provides requested bioconda::alevin-fry >=0.8.2 - nothing provides bedtools >=2.30.0 needed by pyroe-0.9.1-pyhdfd78af_0 Could not solve for environment specs The following packages are incompatible ├─ alevin-fry >=0.8.2 does not exist (perhaps a typo or a missing channel); ├─ bedtools >=2.30.0 does not exist (perhaps a typo or a missing channel); ├─ gffread >=0.12.7 does not exist (perhaps a typo or a missing channel); ├─ piscem >=0.9.0 does not exist (perhaps a typo or a missing channel); ├─ pyroe >=0.9.1 is not installable because it requires │ └─ bedtools >=2.30.0 , which does not exist (perhaps a missing channel); └─ salmon >=1.10.2 does not exist (perhaps a typo or a missing channel).
check_formatting (macos-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
check_formatting (macos-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
check_formatting (macos-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
check_formatting (macos-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
check_formatting (macos-latest)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
check_formatting (macos-latest)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
check_formatting (macos-latest)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
check_formatting (ubuntu-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
check_formatting (ubuntu-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
check_formatting (ubuntu-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
check_formatting (ubuntu-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
check_formatting (ubuntu-latest)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
check_formatting (ubuntu-latest)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
check_formatting (ubuntu-latest)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/