Merge pull request #147 from COMBINE-lab/dev #148
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| name: simpleaf-check | |
| on: | |
| push: | |
| branches: [ main, develop ] | |
| pull_request: | |
| branches: [ main, develop ] | |
| env: | |
| CARGO_TERM_COLOR: always | |
| jobs: | |
| check_formatting: | |
| if: "!contains(github.event.head_commit.message, 'skip ci')" | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-13] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/[email protected] | |
| - name: Install stable toolchain | |
| uses: actions-rs/toolchain@v1 | |
| with: | |
| toolchain: stable | |
| override: true | |
| components: rustfmt | |
| - name: Check format | |
| run: cargo fmt -- --check | |
| - name: Build | |
| run: cargo build --verbose --release | |
| - name: Install conda env | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| channels: conda-forge,default,bioconda | |
| channel-priority: true | |
| activate-environment: anaconda-client-env | |
| environment-file: simpleaf_conda_env.yml | |
| - name: Test simpleaf | |
| shell: bash -l {0} | |
| run: | | |
| export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$CONDA_PREFIX/lib:$CONDA_PREFIX/lib64 | |
| cd scripts | |
| chmod +x test_simpleaf.sh | |
| ./test_simpleaf.sh | |
| - name: Check job status | |
| run: echo "This job's status is ${{ job.status }}." |