Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add link to notebooks on querying the database. #34

Merged
merged 1 commit into from
Dec 4, 2023
Merged

Add link to notebooks on querying the database. #34

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 2 additions & 0 deletions inst/markdown/cohort_selection1.markdown
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1 +1,3 @@
Use this module to create your own custom cohort and to specify how cancer genomics samples are grouped and used for contrasts in iAtlas. You can also upload a file to specify the cohort and sample groups. When you are done, cohort and sample group selection will be saved, and used throughout iAtlas. **You can refer back to this module at any time to review or modify your choices.** A summary of your cohort and sample groups is shown at the bottom of this page.

You can also access the iAtlas data by querying our database. Check our Jupyter Notebooks on how to [query the CRI-iAtlas database](https://github.com/CRI-iAtlas/iatlas-notebooks/blob/main/querying_TCGA_features_and_expression.ipynb). Information specific to the immune checkpoint inhibitor data is avaliable in the [Immune Checkpoint Inhibition data available in iAtlas](https://github.com/CRI-iAtlas/iatlas-notebooks/blob/main/ici_query_iatlas_data.ipynb) notebook.
Loading