Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fix release action #227

Merged
merged 2 commits into from
Oct 6, 2023
Merged

Fix release action #227

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
9a67a8a
Change pmesh requirement to enable upload to PyPI
hmcezar Oct 6, 2023
a2cade9
Add quotes to pmesh installation
hmcezar Oct 6, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions .github/workflows/ci.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -41,6 +41,7 @@ jobs:
python3 -m pip install --upgrade pip
python3 -m pip install --upgrade wheel numpy mpi4py "cython<3"
CC="mpicc" HDF5_MPI="ON" python3 -m pip install --no-binary=h5py h5py
python3 -m pip install "pmesh @ git+https://github.com/rainwoodman/pmesh"
python3 -m pip install -r requirements.txt
- name: Install PLUMED
run: |
Expand Down
1 change: 1 addition & 0 deletions .github/workflows/docs_pages.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -32,6 +32,7 @@ jobs:
run: |
python3 -m pip install --upgrade pip
python3 -m pip install --upgrade wheel numpy mpi4py "cython<3"
python3 -m pip install "pmesh @ git+https://github.com/rainwoodman/pmesh"
python3 -m pip install -r requirements.txt
- name: Install package
run: |
Expand Down
1 change: 1 addition & 0 deletions .github/workflows/release.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -22,6 +22,7 @@ jobs:
run: |
python3 -m pip install --upgrade pip
python3 -m pip install --upgrade wheel numpy mpi4py "cython<3" twine setuptools
python3 -m pip install "pmesh @ git+https://github.com/rainwoodman/pmesh"
python3 -m pip install -r requirements.txt
- name: Build and publish
env:
Expand Down
2 changes: 2 additions & 0 deletions README.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -46,8 +46,10 @@ CC="mpicc" HDF5_MPI="ON" python3 -m pip install --no-binary=h5py h5py
Install HyMD with `pip` by
```bash
python3 -m pip install --upgrade numpy mpi4py cython
python3 -m pip install "pmesh @ git+https://github.com/rainwoodman/pmesh"
python3 -m pip install hymd
```
`pmesh` is installed from the GitHub repository because fixes to be compatible with modern NumPy versions were not pushed to PyPI.
See [HyMD docs](https://cascella-group-uio.github.io/HyMD/doc_pages/installation.html) for more information, including install steps for macOS and non-Debian linux distributions.

#### Run in docker
Expand Down
3 changes: 3 additions & 0 deletions docs/doc_pages/installation.rst
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -77,6 +77,7 @@ Dependencies
python3 -m pip install --upgrade pip
CC="mpicc" HDF5_MPI="ON" python3 -m pip install --no-binary=h5py h5py
python3 -m pip install mpi4py numpy cython
python3 -m pip install "pmesh @ git+https://github.com/rainwoodman/pmesh"


.. group-tab:: Fedora (dnf)
Expand All @@ -88,6 +89,7 @@ Dependencies
python3.9 -m pip install mpi4py numpy cython
export HDF5_DIR="/usr/lib64/openmpi/"
CC="mpicc" HDF5_MPI="ON" python3.9 -m pip install --no-binary=h5py h5py
python3.9 -m pip install "pmesh @ git+https://github.com/rainwoodman/pmesh"

.. group-tab:: Mac OSX (brew)

Expand All @@ -112,6 +114,7 @@ Dependencies
export HDF5_DIR="/usr/local/Cellar/hdf5-mpi/1.13.0/"
CC="mpicc" HDF5_MPI="ON" python3 -m pip install --no-binary=h5py h5py
python3 -m pip install mpi4py numpy cython
python3 -m pip install "pmesh @ git+https://github.com/rainwoodman/pmesh"


.. warning::
Expand Down
2 changes: 1 addition & 1 deletion requirements.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -7,4 +7,4 @@ tomli
cython<3
mpsort
pfft-python
pmesh @ git+https://github.com/rainwoodman/pmesh
pmesh
Loading