Check and Transform R Notebooks

Merge branch 'transform-R-notebooks-to-Rmd' of https://github.com/Cau… #9

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Run time

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Job	Run time
test-R-notebooks (PM1)	9m 43s
test-R-notebooks (PM2)	9m 44s
test-R-notebooks (PM3)	9m 42s
test-R-notebooks (PM4)	9m 42s
test-R-notebooks (PM5)	9m 45s
test-R-notebooks (CM1)	9m 45s
test-R-notebooks (CM2)	7m 31s
test-R-notebooks (CM3)	9m 42s
test-R-notebooks (AC1)	9m 43s
test-R-notebooks (AC2)	9m 43s
test-R-notebooks (T)	9m 41s
	1h 44m 41s