Check and Transform R Notebooks

Transform R notebooks to Rmd; Add checks for R notebooks; Small mod to checks in Python notebooks #14

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Run time

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Job	Run time
test-R-notebooks (PM1)	5m 5s
test-R-notebooks (PM2)	5m 6s
test-R-notebooks (PM3)	5m 6s
test-R-notebooks (PM4)	5m 5s
test-R-notebooks (PM5)	5m 7s
test-R-notebooks (CM1)	5m 8s
test-R-notebooks (CM2)	5m 7s
test-R-notebooks (CM3)	5m 7s
test-R-notebooks (AC1)	5m 7s
test-R-notebooks (AC2)	5m 7s
test-R-notebooks (T)	5m 5s
	56m 10s