Check and Transform R Notebooks

Transform R notebooks to Rmd; Add checks for R notebooks; Small mod to checks in Python notebooks #22

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Run time

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Job	Run time
test-R-notebooks (PM1)	1m 28s
test-R-notebooks (PM2)	1m 27s
test-R-notebooks (PM3)	1m 26s
test-R-notebooks (PM4)	1m 27s
test-R-notebooks (PM5)	1m 28s
test-R-notebooks (CM1)	1m 28s
test-R-notebooks (CM2)	1m 27s
test-R-notebooks (CM3)	1m 26s
test-R-notebooks (AC1)	1m 29s
test-R-notebooks (AC2)	1m 27s
test-R-notebooks (T)	1m 27s
	16m 0s