Check and Transform R Notebooks

Transform R notebooks to Rmd; Add checks for R notebooks; Small mod to checks in Python notebooks #26

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Run time

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Job	Run time
test-R-notebooks (PM1)	4m 50s
test-R-notebooks (PM2)	4m 51s
test-R-notebooks (PM3)	4m 49s
test-R-notebooks (PM4)	4m 49s
test-R-notebooks (PM5)	4m 48s
test-R-notebooks (CM1)	4m 49s
test-R-notebooks (CM2)	4m 50s
test-R-notebooks (CM3)	4m 49s
test-R-notebooks (AC1)	4m 51s
test-R-notebooks (AC2)	4m 56s
test-R-notebooks (T)	4m 49s
	53m 11s