Check R Notebooks

Transform R notebooks to Rmd; Add checks for R notebooks; Small mod to checks in Python notebooks #12

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Run time

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Job	Run time
test-R-notebooks (PM1)	15m 4s
test-R-notebooks (PM2)	36m 52s
test-R-notebooks (PM3)	17m 32s
test-R-notebooks (PM4)	36m 50s
test-R-notebooks (PM5)	13m 24s
test-R-notebooks (CM1)	10m 55s
test-R-notebooks (CM2)	9m 15s
test-R-notebooks (CM3)	16m 56s
test-R-notebooks (AC1)	11m 49s
test-R-notebooks (AC2)	36m 52s
test-R-notebooks (T)	36m 51s
	4h 2m 20s