Check R Notebooks

Transform R notebooks to Rmd; Add checks for R notebooks; Small mod to checks in Python notebooks #28

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Run time

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Job	Run time
test-R-notebooks (PM1)	12m 20s
test-R-notebooks (PM2)	1h 39m 1s
test-R-notebooks (PM3)	16m 32s
test-R-notebooks (PM4)	2h 23m 35s
test-R-notebooks (PM5)	13m 43s
test-R-notebooks (CM1)	10m 26s
test-R-notebooks (CM2)	7m 16s
test-R-notebooks (CM3)	18m 34s
test-R-notebooks (AC1)	13m 36s
test-R-notebooks (AC2)	37m 8s
test-R-notebooks (T)	38m 11s
	6h 50m 22s