prospero searchsource #3937
Workflow file for this run
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| name: Tests | |
| on: | |
| - push | |
| - pull_request | |
| env: | |
| COLREV_PACKAGES: > | |
| colrev.literature_review | |
| colrev.files_dir | |
| colrev.export_man_prep | |
| colrev.dedupe | |
| colrev.colrev_cli_prescreen | |
| colrev.local_index | |
| colrev.unpaywall | |
| colrev.download_from_website | |
| colrev.colrev_cli_pdf_get_man | |
| colrev.ocrmypdf | |
| colrev.remove_coverpage | |
| colrev.remove_last_page | |
| colrev.grobid_tei | |
| colrev.colrev_cli_pdf_prep_man | |
| colrev.colrev_cli_screen | |
| colrev.paper_md | |
| colrev.source_specific_prep | |
| colrev.exclude_non_latin_alphabets | |
| colrev.exclude_collections | |
| colrev.exclude_complementary_materials | |
| colrev.local_index | |
| colrev.exclude_languages | |
| colrev.remove_urls_with_500_errors | |
| colrev.remove_broken_ids | |
| colrev.get_doi_from_urls | |
| colrev.get_year_from_vol_iss_jour | |
| colrev.crossref | |
| colrev.pubmed | |
| colrev.europe_pmc | |
| colrev.dblp | |
| colrev.open_library | |
| colrev.unknown_source | |
| colrev.conditional_prescreen | |
| colrev.psycinfo | |
| colrev.springer_link | |
| colrev.acm_digital_library | |
| colrev.abi_inform_proquest | |
| colrev.scopus | |
| colrev.taylor_and_francis | |
| colrev.web_of_science | |
| colrev.wiley | |
| colrev.trid | |
| colrev.jstor | |
| colrev.ebsco_host | |
| colrev.google_scholar | |
| colrev.eric | |
| colrev.ais_library | |
| colrev.ieee | |
| jobs: | |
| test-minimal-deps: | |
| strategy: | |
| matrix: | |
| platform: [ubuntu-latest] | |
| python-version: ['3.12'] | |
| runs-on: ${{ matrix.platform }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install poetry | |
| run: pipx install poetry | |
| - name: Update setuptools | |
| run: python -m pip install --upgrade pip setuptools --break-system-packages | |
| - name: Install poetry dependencies | |
| run: | | |
| poetry install -E dev --verbose --no-cache | |
| poetry run colrev install ${{ env.COLREV_PACKAGES }} | |
| - name: Setup git | |
| run: | | |
| git config --global user.name "CoLRev update" | |
| git config --global user.email "[email protected]" | |
| git config --global url.https://github.com/.insteadOf git://github.com/ | |
| - name: Run poetry tests (minimal-deps) | |
| run: poetry run pytest tests/0_core/ -vv | |
| test-full-deps: | |
| needs: test-minimal-deps | |
| strategy: | |
| matrix: | |
| platform: [ubuntu-latest, macos-latest] | |
| python-version: ['3.10', '3.11', '3.12'] | |
| runs-on: ${{ matrix.platform }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install poetry | |
| run: | | |
| pipx uninstall-all | |
| rm -rf ~/.local/pipx/venvs/poetry | |
| pipx install poetry --python $(python -c "import sys; print(sys.executable)") | |
| poetry cache clear --all pypi | |
| - name: Install poetry dependencies | |
| run: | | |
| poetry env remove python || true | |
| poetry install -E dev --verbose --no-cache | |
| poetry run colrev install ${{ env.COLREV_PACKAGES }} | |
| - name: Setup git | |
| run: | | |
| git config --global user.name "CoLRev update" | |
| git config --global user.email "[email protected]" | |
| git config --global url.https://github.com/.insteadOf git://github.com/ | |
| - name: Run poetry tests | |
| run: poetry run pytest --slow -vv | |
| test-full-deps-windows: # Separate due to poetry installation concurrency issue: https://github.com/python-poetry/poetry/issues/7370 | |
| needs: test-minimal-deps | |
| strategy: | |
| matrix: | |
| platform: [windows-latest] | |
| python-version: ['3.12'] | |
| runs-on: ${{ matrix.platform }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install poetry | |
| run: | | |
| pipx install poetry --python $(python -c "import sys; print(sys.executable)") | |
| poetry cache clear --all pypi | |
| - name: Set POETRY_CACHE_DIR | |
| run: echo "POETRY_CACHE_DIR=${{runner.temp}}/poetry_cache" >> $GITHUB_ENV | |
| - name: Install poetry dependencies | |
| run: | | |
| poetry env remove python || true | |
| poetry install -E dev --verbose --no-cache | |
| poetry run colrev install ${{ env.COLREV_PACKAGES }} | |
| - name: Setup git | |
| run: | | |
| git config --global user.name "CoLRev update" | |
| git config --global user.email "[email protected]" | |
| git config --global url.https://github.com/.insteadOf git://github.com/ | |
| - name: Run poetry tests | |
| run: poetry run pytest --slow -vv | |
| test-pip-install: | |
| needs: test-minimal-deps | |
| strategy: | |
| matrix: | |
| platform: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ['3.10', '3.11', '3.12'] | |
| runs-on: ${{ matrix.platform }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install via pip | |
| run: | | |
| pip install -e .[dev,tests] | |
| colrev install ${{ env.COLREV_PACKAGES }} | |
| - name: Setup git | |
| run: | | |
| git config --global user.name "CoLRev update" | |
| git config --global user.email "[email protected]" | |
| git config --global url.https://github.com/.insteadOf git://github.com/ | |
| - name: Run tests | |
| run: pytest tests --slow -vv |