tappAS v1.0.8

PATCH of version 1.0.0

Changes:

• Fixed DFI
• Fixed DPA
• sQTL splice junctions are accepted and they are displayed in blue.
• Now, transcript features with the genomic position are displayed correctly.
• GO annotation has been updated (May 12, 2023).
• Now, tappAS only asks for Rscript location once.
• Miscellaneous changes.

tappAS v1.0.7

PATCH of version 1.0.0

Changes:

• Fixed DFI for Single Time series
• Fixed DEA for Single Time series
• FEA now has the option to select all the features in one click
• RBPs feature now are showed in Transcript View
• GO annotation has been updated (February 01, 2021).
• Miscellaneous changes.

tappAS v1.0.6

PATCH of version 1.0.0.

Changes:

• Fixed DFI for Single Time Series.
• Fixed DPA for Single Time Series.
• Fixed UTRL for Single Time Series.
• Miscellaneous changes.

tappAS v1.0.5

PATCH of version 1.0.0.

Changes:

• Now, tappAS can manage projects without coding transcripts.
• Faster insertion of TranscriptInformation if it is not present in the GFF3.
• Fixed DFI for Time series and Gene visualization.
• Updated GO annotation (December 08, 2020).
• Miscellaneous changes.

tappAS v1.0.4

PATCH of version 1.0.0.

Changes:

• Fixed label position in FDA summary graphics.
• Fixed bug in DPA heatmap.
• Fixed bug in UTR lengthening analysis.
• Updated GO annotation (October, 2020).

tappAS v1.0.3

PATCH of version 1.0.0.

Changes:

• Fixed bug in DFI summary plots that prevented prevented correct detection of Transcript and Protein annotation categories.
• Fixed minor bug in DIU analysis arising when proportion filtering of minor isoforms was used.

tappAS v1.0.2

PATCH of version 1.0.0.

Changes:

• Fixed DFI bug when running analysis on low number of annotations.
• Updated GO annotation (July 16, 2020).
• Miscellaneous changes.

tappAS v1.0.1

PATCH of version 1.0.0.

Changes:

• Fixed bug in DFI analysis for Multiple Time Course designs.
• Updated contact page.
• GO annotation has been updated (May 2, 2020).
• Miscellaneous changes.

tappAS v1.0.0

tappAS first public non-beta release (v1.0.0). See https://app.tappas.org/downloads/ for details.

Note: this version was used to generate results and method descriptions in the published manuscript.