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651 conda activate fix mk#682

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martinkilbinger wants to merge 178 commits intodevelopCosmoStat/shapepipe:developfrom 651-conda-activate-fix-MKCosmoStat/shapepipe:651-conda-activate-fix-MKCopy head branch name to clipboard

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Commits

Commits on Nov 16, 2022

• added Dockerfile and GH action

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• added make dependency

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Commits on May 15, 2023

• notebook

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Commits on Nov 1, 2023

• docker testing

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Commits on Nov 3, 2023

• Merge remote-tracking branch 'upstream/develop' into docker_image

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Commits on Nov 8, 2023

• Dockerfile tests

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• Added cent-os to CI tests

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• fixed bug in install_shapepipe

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• Added development environment.

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Commits on Nov 9, 2023

• Added pyproject

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Commits on Nov 10, 2023

• canfar pyproject update

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• cfis vos configs: missing keywords, DR5 added

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Commits on Nov 15, 2023

• Testing dockerfile with only conda env installed

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• Fixing numpy and astropy versions

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Commits on Nov 17, 2023

• installation on canfar working: removed most versions from yml file; added init_canfar.sh script

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• Dockerfile for image 0:7, 0:8

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Commits on Nov 19, 2023

• Installation of sextractor and psfex with conda

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• script to call curl with canfar contained updated, adding NCORE as argument

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• added init scripts for canfar; job_sp added n_smp for further jobs

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• script to call curl for canfar container: added resources

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• testing input numbers

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Commits on Nov 20, 2023

• removed debug msg

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• numpy error fixed with version upgrade

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• Merge branch 'science_portal_run' of github.com:martinkilbinger/shapepipe-1 into science_portal_run

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Commits on Nov 22, 2023

• Getting ready for exclusive-one-tile processing

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• Added command line option to specify exclusive ID for processing

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• Merge remote-tracking branch 'origin/exclusive' into science_portal_run

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Commits on Nov 24, 2023

• curl script exclusive ID

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• Dockerfile conda -> source activate

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• Merge remote-tracking branch 'origin/docker_image' into docker_image

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• Merge branch 'docker_image' of github.com:martinkilbinger/shapepipe-1 into docker_image

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• comment added

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• Updated Dockerfile

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• running with exclusive ID

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Commits on Nov 25, 2023

• exp runs

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• local curl script NCORES -> 1

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Commits on Nov 28, 2023

• Renamed science-portal scripts (local/remote)

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Commits on Nov 30, 2023

• added BigMac depdendency for macOS

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Commits on Dec 1, 2023

• activate dev environment

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• trying to run Pi

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• Merge remote-tracking branch 'origin/science_portal_run' into exclusive

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• numpy -> 1.22 to avoid asscalar bug

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• added cs_util to dev env

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Commits on Dec 3, 2023

• aux script to create links for exposure output runs for tile

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• Merge remote-tracking branch 'origin/science_portal_run' into exclusive

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• Added aux script to update runs log file

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• update runs log file script: deal with multiple runs of same module

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Commits on Dec 4, 2023

• run_log: added function get_all_dirs

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• Fixed new function get_all_dirs

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• Fixed (as for MCCD) FITS key bug

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• Merge branch 'exclusive' of github.com:martinkilbinger/shapepipe-1 into science_portal_run

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• vignet makers: can use last and all in additional input inage directories

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Commits on Dec 8, 2023

• Dockerfile + jupyter, activate

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• file handler raises error if no process

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• combine mask outputs

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Commits on Dec 13, 2023

• canfar curl command: added kind (tile, exp) as option

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• curl remote job script init_run_exclusive_canfar: command line options properly

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Commits on Dec 14, 2023

• curl local command: added -k kind

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Commits on Dec 15, 2023

• summary missing ID 32 fixed (?)

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• canfar scripts command line options

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• curl canfar local script added job, kind

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• Merge branch 'exclusive' of github.com:martinkilbinger/shapepipe-1 into science_portal_run

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• Merge pull request #4 from martinkilbinger/science_portal_run

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Commits on Dec 17, 2023

• SP ngmxix (job 128) running on canfar

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• curl canfar local script updated

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• Merge branch 'exclusive' of github.com:martinkilbinger/shapepipe-1 into exclusive

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Commits on Dec 19, 2023

• curl scripts updated

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• Merge branch 'exclusive' of github.com:martinkilbinger/shapepipe-1 into exclusive

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• run summary more OO

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• Merge branch 'exclusive' of github.com:martinkilbinger/shapepipe-1 into exclusive

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Commits on Dec 21, 2023

• update_runs_log_file script: fixed bug when run dir is empty

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• improved canfar job scripts; fixed some make cat bugs

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• added curl to Dockerimage

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• Merge remote-tracking branch 'origin/exclusive' into exclusive

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• Remove temp hack from mask

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• Merge branch 'exclusive' of github.com:martinkilbinger/shapepipe-1 into exclusive

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• removed unused code from mask

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• Merge pull request #3 from martinkilbinger/exclusive

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• Merge remote-tracking branch 'origin/develop' into develop

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Commits on Dec 23, 2023

• curl scripts updated

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Commits on Dec 25, 2023

• combine psf validation files: preles now with prepare_tiles_for_final.bash

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• Update post_processing.md

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• prepare tiles script loop tests

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• Merge branch 'p3' of github.com:martinkilbinger/shapepipe-1 into p3

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• curl canfar local script minor change

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  ac0a339

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• added vos doc md file

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• Update post_processing.md

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• Update vos_retrieve.md

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• Update vos_retrieve.md

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• Update vos_retrieve.md

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• combine runs script renamed

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• Merge branch 'p3' of github.com:martinkilbinger/shapepipe-1 into p3

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• Update post_processing.md

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Commits on Dec 26, 2023

• P3 proceesing to final cat

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• Merge branch 'p3' of github.com:martinkilbinger/shapepipe-1 into p3

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• Merge branch 'develop' into p3

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• Merge pull request #5 from martinkilbinger/p3

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Commits on Jan 6, 2024

• config files updated

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Commits on Jan 15, 2024

• PSFEx interp runner: allowing all: for ME_DOT_PSF_PDIRS

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• init run exc script: added -d option; updates

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• job sp canfar script: remove old vos upload code

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• summary create library and param files

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• minor changes

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• curl local script: now working with -e ID and -f file_IDs, in dry and real run

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Commits on Jan 16, 2024

• summary: fixed main path, verbose

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• Started canfar howto

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• Added summary run notebook

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Commits on Jan 17, 2024

• psfex_interp: continue instead of error if one of the .psf files not found

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• fixed symlink config files

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• Updated summary run

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• revert to main psfex in link exp for tiles script

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• curl job script: remoging session logs

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• comments

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• Merge pull request #6 from martinkilbinger/P7

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Commits on Jan 19, 2024

• Update canfar.md

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• Update canfar.md

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• Merge pull request #8 from martinkilbinger/martinkilbinger-patch-1

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• Merge pull request #7 from martinkilbinger/martinkilbinger-canfar-doc

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Commits on Jan 26, 2024

• updated canfar doc

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• script with akaha lib to count headlerss jobs

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• cleaned up curl submit script

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• minor modifs to summary

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• Removed VM_HOME; jon sp canfar cleaned up

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Commits on Jan 30, 2024

• Dockerfile cleand up

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Commits on Feb 1, 2024

• summary params minor bug fixed

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• major bugx fixed: N_SMP was n_SMP, not propagated

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• major bugx fixed: N_SMP was n_SMP, not propagated

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• summary nb

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Commits on Feb 11, 2024

• sumamry updated

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• terminal title from within curl script

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• Update tiles_P7.txt

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• Merge pull request #9 from martinkilbinger/P7

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• merged Dockerfile from docker_image

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Commits on Feb 23, 2024

• Merge remote-tracking branch 'origin/develop' into develop

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• monitoring and job handling scripts; small modifs, output; canfar pipeline job description to docs/source

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• Merge pull request #10 from martinkilbinger/curl

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Commits on Mar 5, 2024

• combine run script: flag_tile and flag_exp as diff options

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Commits on Mar 6, 2024

• mask runer excluding processed files working

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• combine runs for masks: changed output target dir name

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• summary bug fixed

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• comment removed

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• style

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• Merge pull request #11 from martinkilbinger/mask

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• t branMerge remote-tracking branch 'origin/develop' into develop

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• Merge remote-tracking branch 'origin/develop' into docker_image

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• Delete scripts/sh/init_canfar.sh

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• Merge pull request #13 from martinkilbinger/docker_image

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• Merge remote-tracking branch 'origin/develop' into develop

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• Merge remote-tracking branch 'origin/develop' into plot_spectro

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• Merge pull request #14 from martinkilbinger/plot_spectro

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• Merge remote-tracking branch 'origin/develop' into develop

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• remove centos ci

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• Merge branch 'develop' of github.com:martinkilbinger/shapepipe-1 into develop

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• repaired plot spectro notebook

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• added doc string

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• Merge branch 'develop' of github.com:martinkilbinger/shapepipe-1 into develop

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• python example runner: added back mccd and pysap

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• corrected typo in doc string

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Commits on Mar 13, 2024

• updated canfar pipeline doc

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• fixed combined mask input dir

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• added parameters to final cat

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• summary

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• Removed rarely used ngmix njob/ngal options; splits computed automatically

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• canfar init + run job: removed prev Ms and Mc dirs for job 256

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• merge sep cats: error if ngmix #HDUs < 6

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• Merge pull request #15 from martinkilbinger/cleanup_canfar

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Commits on Apr 3, 2024

• env-dev updated to min versions on canfar (docker image SP 1.1)

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Commits on Apr 4, 2024

• Merge remote-tracking branch 'upstream' into 651-conda-activate-fix-MK

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• Merge remote-tracking branch 'origin/develop' into 651-conda-activate-fix-MK

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Commits on Apr 10, 2024

• minor changes

  

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Commits on Oct 21, 2024

• Merge remote-tracking branch 'upstream/develop' into 651-conda-activate-fix-MK

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