upating documentation

CostaLab · Nov 8, 2024 · 5bd91e5 · 5bd91e5
1 parent 39ccac8
commit 5bd91e5
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Showing 4 changed files with 5 additions and 2 deletions.
diff --git a/.gitignore b/.gitignore
@@ -9,3 +9,4 @@ omnipathr-log
 .ipynb_checkpoints
 /markdown/.ipynb_checkpoints
 .Rhistory
+/.vscode/
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -36,7 +36,7 @@ biocViews: Network, SystemsBiology, SingleCell, Software, GraphAndNetwork
 Encoding: UTF-8
 LazyData: TRUE
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.3.1
+RoxygenNote: 7.3.2
 Imports:
     pals (>= 1.1),
     graphlayouts (>= 0.7.0),

diff --git a/R/plot.R b/R/plot.R
@@ -1321,6 +1321,7 @@ plot_bar_rankings_cci <- function(data_object, table_name, ranking = "pagerank",
 #' @param ranking name of the network ranking to use
 #' @param type gene type (L,R,TF, LR/RL, RTF/TFR, LTF/TFL)
 #' @param filter_sign show all (NULL), only positive (pos), or only negativ (neg) results
+#' @param top_num number of top genes to show in positive or negative direction
 #' @import ggplot2
 #' @import ggrepel
 #' @import reshape2

diff --git a/man/plot_bar_rankings.Rd b/man/plot_bar_rankings.Rd