Use nextflow to distribute Jenkins CI over Sherlock nodes

runscripts/jenkins/configs/ecoli-anaerobic.json

@@ -19,6 +19,7 @@
         "single": {"mass_fraction_summary": {}}
     },
     "variants": {
-        "condition": {"condition": "no_oxygen"}
-    }
+        "condition": {"condition": {"value": ["no_oxygen"]}}
+    },
+    "sherlock": true
 }

runscripts/jenkins/configs/ecoli-glucose-minimal.json

@@ -9,5 +9,6 @@
     },
     "analysis_options": {
         "single": {"mass_fraction_summary": {}}
-    }
+    },
+    "sherlock": true
 }

runscripts/jenkins/configs/ecoli-new-gene-gfp.json

@@ -33,5 +33,6 @@
             },
             "op": "zip"
         }
-    }
+    },
+    "sherlock": true
 }

runscripts/jenkins/configs/ecoli-no-growth-rate-control.json

@@ -16,5 +16,6 @@
     },
     "analysis_options": {
         "single": {"mass_fraction_summary": {}}
-    }
+    },
+    "sherlock": true
 }

runscripts/jenkins/configs/ecoli-no-operons.json

@@ -12,5 +12,6 @@
     },
     "analysis_options": {
         "single": {"mass_fraction_summary": {}}
-    }
+    },
+    "sherlock": true
 }

runscripts/jenkins/configs/ecoli-superhelical-density.json

@@ -10,5 +10,6 @@
     },
     "analysis_options": {
         "single": {"mass_fraction_summary": {}}
-    }
+    },
+    "sherlock": true
 }

runscripts/jenkins/configs/ecoli-with-aa.json

@@ -11,6 +11,7 @@
         "single": {"mass_fraction_summary": {}}
     },
     "variants": {
-        "condition": {"condition": "with_aa"}
-    }
+        "condition": {"condition": {"value": ["with_aa"]}}
+    },
+    "sherlock": true
 }