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add "daily new cases per 100.000 inh." visualization for regions based on isMOOD #12

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add "daily new cases per 100.000 inh." visualization for regions based on isMOOD #12

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6583990
add time based visualization for regions based on isMOOD
marcusfey Oct 18, 2020
8f5cb1f
chmod 755
marcusfey Oct 19, 2020
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74 changes: 74 additions & 0 deletions analysis/visualizations/isMOOD_regions.pl
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#!/usr/bin/perl -w

use strict;
my $DATE_RANGE=14;

my ($csvName, $datName, $gpName, $pngName) = @ARGV;

open (IN, "<", $csvName);

my @header=split(/,/, <IN>);
my @dates=@header[3 .. $#header];

my @datesRelevant=@dates[$DATE_RANGE .. $#dates];

my @deltasAll;
my @regions;

open (OUT, ">",$datName);

while(<IN>) {
my ($nameGr,$nameEn,$inh,@cumm)=split(/,/);
my @delta;
if($inh) {
for(my $i=$DATE_RANGE;$i<=$#cumm;$i++) {
push @delta, ($cumm[$i] - $cumm[$i-$DATE_RANGE]) / $inh * 100000;
}
push @deltasAll, \@delta;
push @regions, $nameEn;
}
}

for (my $i=0;$i<=$#datesRelevant;$i++) {
print OUT $datesRelevant[$i]."\t";
for(my $j=0;$j<=$#deltasAll;$j++) {
print OUT ${$deltasAll[$j]}[$i]."\t";
}
print OUT "\n";
}
close (OUT);

open (OUT, ">" , $gpName);
print OUT "set title \"Cases per 100.000 inh., date range $DATE_RANGE days\"\n";
print OUT "set key left top\n";
print OUT 'set timefmt "%d/%m/%y"'."\n";
print OUT "set xdata time\n";
print OUT "set xtics 10/01, 604800\n";
print OUT "set ytics 0, 10\n";
#print OUT "set xlabel \"foo\" rotate by 90\n";
print OUT 'set output "'.$pngName."\"\n";
#print OUT "set term png medium size 1200,900\n";
print OUT "set term svg size 1200,900 enhanced background rgb 'white'\n";
print OUT "set grid xtics, ytics\n";
print OUT "set nologscale y\n";
print OUT "set samples 400\n";
print OUT "plot ";

my $smooth=
"";
#"smooth csplines";
for(my $j=0;$j<$#regions;$j++) {
print OUT ($j>0 ? "," : "") ." \"$datName\" using 1:" . ($j+2) . " with linespoints $smooth title \"" . $regions[$j]. '"';
}
print OUT "\n";

for(my $j=0;$j<$#regions;$j++) {
print OUT 'set output "'.substr($pngName, 0, -4).$j.substr($pngName, -4)."\"\n";
print OUT "plot \"$datName\" using 1:" . ($j+2) . " with linespoints $smooth title \"" . $regions[$j]. "\"\n";
}


close OUT;

system "gnuplot $gpName";
system "thunar $pngName";
1 change: 1 addition & 0 deletions analysis/visualizations/isMOOD_regions.sh
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./isMOOD_regions.pl ../../data/greece/isMOOD/cases_by_region_timeline.csv `tempfile` isMOOD_cases_by_region_timeline.plt isMOOD_cases_by_region_timeline.svg