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Issues: DKFZ-ODCF/reference-data

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10 Open 7 Closed
10 Open 7 Closed
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Issues list

STAR index failing on gitlab-runner with 4 cores / 16 gigs RAM
#17 opened Aug 13, 2021 by mobilegenome
Add paths/links to auxialliary data & display on CI-built info website for each genome
#16 opened Apr 30, 2021 by mobilegenome
Add cellranger mkref (cellranger indeces) enhancement New feature or request
#15 opened Feb 9, 2021 by mobilegenome
2 tasks
1
Create multi-species genomes (hybrids, xenograft) enhancement New feature or request
#14 opened Feb 4, 2021 by mobilegenome
Add creation of bowtie2 index enhancement New feature or request
#13 opened Feb 4, 2021 by mobilegenome
2 tasks
Use kubernetes to run pipeline, instead of a static VM. enhancement New feature or request
#12 opened Dec 1, 2020 by mobilegenome
Idea: Use snakemake-incudes to define subroutines in the pipeline (and conditionally execute) enhancement New feature or request
#7 opened Oct 5, 2020 by mobilegenome
List of files to be generated for OTP enhancement New feature or request
#6 opened Aug 26, 2020 by mobilegenome
7 of 24 tasks
@mobilegenome
2
Retrieve genomes from sources other than ENSEMBL
#5 opened Aug 19, 2020 by mobilegenome
Define a Snakemake report template enhancement New feature or request
#4 opened Aug 14, 2020 by mobilegenome
ProTip! Follow long discussions with comments:>50.