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Merge pull request #9 from DOH-JDJ0303/ecr
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DOCKER HUB -> ECR
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DOH-JDJ0303 authored Jun 26, 2024
2 parents 5c843f9 + 270328e commit aed36a5
Showing 1 changed file with 10 additions and 10 deletions.
20 changes: 10 additions & 10 deletions conf/modules.config
Original file line number Diff line number Diff line change
Expand Up @@ -18,14 +18,14 @@ process {
saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
]
withName: TIMESTAMP {
container = 'docker.io/jdj0303/epitome-base:1.0'
container = 'public.ecr.aws/o8h2f0o1/epitome-base:1.0'
publishDir = [
path: { "${params.outdir}/" },
pattern: "none"
]
}
withName: INPUT_QC {
container = 'docker.io/jdj0303/epitome-base:1.0'
container = 'public.ecr.aws/o8h2f0o1/epitome-base:1.0'
publishDir = [
path: { "${params.outdir}/${taxa}/${segment}/qc" },
pattern: "*.csv"
Expand Down Expand Up @@ -56,25 +56,25 @@ process {
]
}
withName: CLUSTER {
container = 'docker.io/jdj0303/epitome-base:1.0'
container = 'public.ecr.aws/o8h2f0o1/epitome-base:1.0'
publishDir = [
path: { "${params.outdir}/${taxa}/${segment}/clusters" }
]
}
withName: CLUSTER_LOOSEENDS {
container = 'docker.io/jdj0303/epitome-base:1.0'
container = 'public.ecr.aws/o8h2f0o1/epitome-base:1.0'
publishDir = [
path: { "${params.outdir}/${taxa}/${segment}/clusters" }
]
}
withName: ASSIGN_REMAINDER {
container = 'docker.io/jdj0303/epitome-base:1.0'
container = 'public.ecr.aws/o8h2f0o1/epitome-base:1.0'
publishDir = [
path: { "${params.outdir}/${taxa}/${segment}/clusters" }
]
}
withName: BIND_CLUSTERS {
container = 'docker.io/jdj0303/epitome-base:1.0'
container = 'public.ecr.aws/o8h2f0o1/epitome-base:1.0'
publishDir = [
path: { "${params.outdir}/${taxa}/${segment}/clusters" }
]
Expand All @@ -98,14 +98,14 @@ process {
]
}
withName: CONSENSUS {
container = 'docker.io/jdj0303/epitome-base:1.0'
container = 'public.ecr.aws/o8h2f0o1/epitome-base:1.0'
publishDir = [
path: { "${params.outdir}/${taxa}/${segment}/consensus" },
pattern: "none"
]
}
withName: CONDENSE {
container = 'docker.io/jdj0303/epitome-base:1.0'
container = 'public.ecr.aws/o8h2f0o1/epitome-base:1.0'
publishDir = [
path: { "${params.outdir}/${taxa}/${segment}/consensus" },
pattern: "*.fa.gz"
Expand All @@ -126,13 +126,13 @@ process {
]
}
withName: SUMMARY {
container = 'docker.io/jdj0303/epitome-base:1.0'
container = 'public.ecr.aws/o8h2f0o1/epitome-base:1.0'
publishDir = [
path: { "${params.outdir}/summary" }
]
}
withName: EXPORT {
container = 'docker.io/jdj0303/epitome-base:1.0'
container = 'public.ecr.aws/o8h2f0o1/epitome-base:1.0'
publishDir = [
path: { "${params.outdir}/" }
]
Expand Down

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