refactor(setup): convert project to use pyproject.toml

MANIFEST.in

@@ -1,5 +1,4 @@
 include Readme.md
-include requirements.txt
 
 recursive-exclude * __pycache__
 recursive-exclude * *.py[co]
@@ -10,7 +9,6 @@ include versioneer.py
 include mfsetup/_version.py
 include mfsetup/mfnwt_defaults.yml
 include mfsetup/mf6_defaults.yml
-include mfsetup/tests/data/shellmound.yml
 
 # If including data files in the package, add them like:
 # include path/to/data_file

pyproject.toml

@@ -1,7 +1,89 @@
 [build-system]
-requires = ["setuptools", "wheel"]
+requires = [
+    "setuptools >= 61",
+    #"wheel"
+    #'tomli; python_version < "3.11"',
+]
 build-backend = "setuptools.build_meta"
 
+[project]
+name = "modflow-setup"
+dynamic = ["version"]
+authors = [
+    { name = "Andrew Leaf", email = "[email protected]" },
+    { name = "Mike Fienen", email = "[email protected]" },
+]
+description = "Rapid and robust construction of MODFLOW groundwater flow models"
+readme = "Readme.md"
+keywords = ["MODFLOW", "groundwater", "hydrogeology"]
+license = {file = "LICENSE.md"}
+classifiers = [
+    "Development Status :: 4 - Beta",
+    "Intended Audience :: Science/Research",
+    "Programming Language :: Python :: 3 :: Only",
+    "Topic :: Scientific/Engineering :: Hydrology",
+]
+requires-python = ">=3.11"
+dependencies = [
+    "geopandas",
+    "gis-utils",
+    "fiona",
+    "flopy",
+    "modflow-export",
+    "netcdf4",
+    "numpy",
+    "pandas",
+    "pyproj",
+    "pyyaml",
+    "rasterio",
+    "rasterstats",
+    "rtree",
+    "scipy",
+    "sfrmaker",
+    "shapely",
+    "xarray",
+]
+
+[project.optional-dependencies]
+optional = [
+    "matplotlib",
+
+]
+test = [
+    "codecov",
+    "coverage",
+    "pytest",
+    "pytest-timeout"
+]
+docs = [
+    "matplotlib",
+    "modflow-export[optional]",
+    "ipython[kernel]",
+    "sphinx",
+    "numpydoc",
+    "nbsphinx",
+    "sphinx-copybutton",
+    "sphinx-rtd-theme"
+]
+
+[project.scripts]
+get-modflow = "flopy.utils.get_modflow:cli_main"
+
+[project.urls]
+documentation = "https://doi-usgs.github.io/modflow-setup/latest/"
+repository = "https://github.com/doi-usgs/modflow-setup"
+
+[tool.setuptools.packages.find]
+include = ["mfsetup", "mfsetup.*"]
+
+[tool.versioneer]
+VCS = "git"
+style = "pep440-post"
+versionfile_source = "mfsetup/_version.py"
+versionfile_build = "mfsetup/_version.py"
+tag_prefix = "v"
+parentdir_prefix = "mfsetup-"
+
 [tool.isort]
 default_section = "THIRDPARTY"
 known_first_party = ["xarray"]

setup.py

@@ -1,74 +1,18 @@
+import os
 import sys
-from os import path
 
-from setuptools import find_packages, setup
+from setuptools import setup
 
 # ensure the current directory is on sys.path so versioneer can be imported
 # when pip uses PEP 517/518 build rules.
 # https://github.com/python-versioneer/python-versioneer/issues/193
-sys.path.append(path.dirname(__file__))
-
-import versioneer  # noqa: E402
-
-# NOTE: This file must remain Python 2 compatible for the foreseeable future,
-# to ensure that we error out properly for people with outdated setuptools
-# and/or pip.
-min_version = (3, 6)
-if sys.version_info < min_version:
-    error = """
-modflow-setup does not support Python {0}.{1}.
-Python {2}.{3} and above is required. Check your Python version like so:
-
-python3 --version
-
-This may be due to an out-of-date pip. Make sure you have pip >= 9.0.1.
-Upgrade pip like so:
-
-pip install --upgrade pip
-""".format(*(sys.version_info[:2] + min_version))
-    sys.exit(error)
-
-here = path.abspath(path.dirname(__file__))
-
-with open(path.join(here, 'Readme.md'), encoding='utf-8') as readme_file:
-    readme = readme_file.read()
-
-with open(path.join(here, 'requirements.txt')) as requirements_file:
-    # Parse requirements.txt, ignoring any commented-out lines.
-    requirements = [line for line in requirements_file.read().splitlines()
-                    if not line.startswith('#')]
+sys.path.append(os.path.dirname(__file__))
 
+import versioneer
 
+# see pyproject.toml for static project metadata
 setup(
     name='modflow-setup',
     version=versioneer.get_version(),
     cmdclass=versioneer.get_cmdclass(),
-    description="Robust automation of MODFLOW model construction.",
-    long_description=readme,
-    long_description_content_type='text/markdown',
-    author="USGS MAP Project",
-    author_email='[email protected]',
-    url='https://github.com/aleaf/modflow-setup',
-    python_requires='>={}'.format('.'.join(str(n) for n in min_version)),
-    packages=find_packages(exclude=['docs', 'tests']),
-    entry_points={
-        'console_scripts': [
-            # 'some.module:some_function',
-            ],
-        },
-    include_package_data=True,
-    package_data={
-        'modflow-setup': [
-            # When adding files here, remember to update MANIFEST.in as well,
-            # or else they will not be included in the distribution on PyPI!
-            # 'path/to/data_file',
-            ]
-        },
-    install_requires=requirements,
-    license="BSD (3-clause)",
-    classifiers=[
-        'Development Status :: 2 - Pre-Alpha',
-        'Natural Language :: English',
-        'Programming Language :: Python :: 3',
-    ],
 )