Skip to content

Issues: DataBiosphere/azul

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort

Issues list

Verbatim PFB manifest to failure due to missing DUOS registration + [priority] High bug [type] A defect preventing use of the system as specified manifests [subject] Generation and contents of manifests orange [process] Done by the Azul team
#6871 opened Jan 31, 2025 by nadove-ucsc
Add PR checklist item for detaching partial PRs orange [process] Done by the Azul team
#6869 opened Jan 30, 2025 by hannes-ucsc
Terraform deprecation warning for usage of lifecycle_rule orange [process] Done by the Azul team spike:1 [process] Spike estimate of one point
#6868 opened Jan 30, 2025 by achave11-ucsc
Add g and s as commit title tags for shared and gitlab labels orange [process] Done by the Azul team
#6864 opened Jan 29, 2025 by hannes-ucsc
Implement mirror_file, mirror_part & finalize_file + [priority] High enh [type] New feature or request mirror [subject] Code and infrastructure for mirroring data files orange [process] Done by the Azul team
#6862 opened Jan 29, 2025 by hannes-ucsc
Implement mirror_partition + [priority] High enh [type] New feature or request mirror [subject] Code and infrastructure for mirroring data files orange [process] Done by the Azul team
#6861 opened Jan 29, 2025 by hannes-ucsc
Implement mirror_source + [priority] High enh [type] New feature or request mirror [subject] Code and infrastructure for mirroring data files orange [process] Done by the Azul team
#6860 opened Jan 29, 2025 by hannes-ucsc
6 tasks
Create mirror queues and bucket + [priority] High enh [type] New feature or request mirror [subject] Code and infrastructure for mirroring data files orange [process] Done by the Azul team
#6859 opened Jan 29, 2025 by hannes-ucsc
Promotion 2025-01-28 - [priority] Medium infra [subject] Project infrastructure like CI/CD, build and deployment scripts no demo [process] Not to be demonstrated at the end of the sprint operator [process] To be addressed by whoever is operator orange [process] Done by the Azul team task [type] Resolution requires engineering action other than code changes
#6858 opened Jan 28, 2025 by azul-group
7 tasks done
Prototype mirroring of a single HCA file + [priority] High code [subject] Production code orange [process] Done by the Azul team task [type] Resolution requires engineering action other than code changes
#6857 opened Jan 28, 2025 by hannes-ucsc
Data mirroring enh [type] New feature or request epic [type] Issue consists of multiple smaller issues mirror [subject] Code and infrastructure for mirroring data files orange [process] Done by the Azul team
#6856 opened Jan 28, 2025 by hannes-ucsc
Elasticsearch request causes task timeout - [priority] Medium bug [type] A defect preventing use of the system as specified infra [subject] Project infrastructure like CI/CD, build and deployment scripts orange [process] Done by the Azul team
#6852 opened Jan 27, 2025 by dsotirho-ucsc
Redundant manifest generations due to race condition - [priority] Medium bug [type] A defect preventing use of the system as specified manifests [subject] Generation and contents of manifests orange [process] Done by the Azul team
#6850 opened Jan 25, 2025 by hannes-ucsc
AnVIL entity IDs should be based on primary key columns orange [process] Done by the Azul team
#6844 opened Jan 23, 2025 by nadove-ucsc
Verbatim PFB handover fails when using a common prefix orange [process] Done by the Azul team
#6843 opened Jan 23, 2025 by nadove-ucsc
Populate dev with an updated LungMAP snapshots from prod - [priority] Medium data [subject] Data or metadata [use of this label is uncommon] debt [type] A defect incurring continued engineering cost enh [type] New feature or request orange [process] Done by the Azul team spike:2 [process] Spike estimate of two points
#6841 opened Jan 22, 2025 by dsotirho-ucsc
Can't merge promotion branch if stable branch was updated - [priority] Medium bug [type] A defect preventing use of the system as specified debt [type] A defect incurring continued engineering cost infra [subject] Project infrastructure like CI/CD, build and deployment scripts orange [process] Done by the Azul team
#6839 opened Jan 21, 2025 by achave11-ucsc
Promotion 2025-01-21 - [priority] Medium infra [subject] Project infrastructure like CI/CD, build and deployment scripts no demo [process] Not to be demonstrated at the end of the sprint operator [process] To be addressed by whoever is operator orange [process] Done by the Azul team task [type] Resolution requires engineering action other than code changes
#6835 opened Jan 21, 2025 by azul-group
7 tasks done
Mutability of BigQueryReservation confuses type checker - [priority] Medium bug [type] A defect preventing use of the system as specified code [subject] Production code debt [type] A defect incurring continued engineering cost orange [process] Done by the Azul team
#6834 opened Jan 20, 2025 by hannes-ucsc
Upgrade dependencies 2025-01-20 debt [type] A defect incurring continued engineering cost enh [type] New feature or request infra [subject] Project infrastructure like CI/CD, build and deployment scripts no demo [process] Not to be demonstrated at the end of the sprint operator [process] To be addressed by whoever is operator orange [process] Done by the Azul team
#6833 opened Jan 20, 2025 by azul-group
38 tasks done
Promotion 2025-01-14 - [priority] Medium infra [subject] Project infrastructure like CI/CD, build and deployment scripts no demo [process] Not to be demonstrated at the end of the sprint operator [process] To be addressed by whoever is operator orange [process] Done by the Azul team task [type] Resolution requires engineering action other than code changes
#6824 opened Jan 14, 2025 by azul-group
7 tasks done
Dockerfile should source environment for global defaults -- [priority] Low bug [type] A defect preventing use of the system as specified debt [type] A defect incurring continued engineering cost infra [subject] Project infrastructure like CI/CD, build and deployment scripts orange [process] Done by the Azul team
#6823 opened Jan 13, 2025 by achave11-ucsc
Adopt mypy - [priority] Medium debt [type] A defect incurring continued engineering cost enh [type] New feature or request infra [subject] Project infrastructure like CI/CD, build and deployment scripts no demo [process] Not to be demonstrated at the end of the sprint orange [process] Done by the Azul team
#6821 opened Jan 13, 2025 by hannes-ucsc
Review rule set for audited events 2025-01-10 - [priority] Medium compliance [subject] Information and software security doc [subject] Internal and external documentation no demo [process] Not to be demonstrated at the end of the sprint orange [process] Done by the Azul team task [type] Resolution requires engineering action other than code changes
#6816 opened Jan 10, 2025 by dsotirho-ucsc
1 task
Move Annual review of the rule set for audited events to January + [priority] High compliance [subject] Information and software security doc [subject] Internal and external documentation enh [type] New feature or request no demo [process] Not to be demonstrated at the end of the sprint orange [process] Done by the Azul team
#6813 opened Jan 9, 2025 by nolunwa-ucsc
ProTip! Type g i on any issue or pull request to go back to the issue listing page.