try to make dockstore happy #919
Workflow file for this run
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| name: Build and Test | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths-ignore: | |
| - '*.md' | |
| - '.github/**' | |
| pull_request: | |
| branches: [ '**' ] | |
| # There is an issue with GitHub required checks and paths-ignore. We don't really need to | |
| # run the tests if there are only irrelevant changes (see paths-ignore above). However, | |
| # we require tests to pass by making a "required check" rule on the branch. If the action | |
| # is not triggered, the required check never passes and you are stuck. Therefore, we have | |
| # to run tests even when we only change a markdown file. So don't do what I did and put a | |
| # paths-ignore right here! | |
| workflow_dispatch: {} | |
| jobs: | |
| bump-check: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| is-bump: ${{ steps.skiptest.outputs.is-bump }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Skip version bump merges | |
| id: skiptest | |
| uses: ./.github/actions/bump-skip | |
| with: | |
| event-name: ${{ github.event_name }} | |
| build: | |
| needs: [ bump-check ] | |
| runs-on: ubuntu-latest | |
| if: needs.bump-check.outputs.is-bump == 'no' | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up JDK | |
| uses: actions/setup-java@v2 | |
| with: | |
| java-version: '17' | |
| distribution: 'temurin' | |
| cache: 'gradle' | |
| - name: Build the test harness and, by dependency, the service library | |
| run: ./gradlew --build-cache build -x test | |
| jib: | |
| needs: [ build ] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up JDK | |
| uses: actions/setup-java@v2 | |
| with: | |
| java-version: '17' | |
| distribution: 'temurin' | |
| cache: 'gradle' | |
| - name: Construct docker image name and tag | |
| id: image-name | |
| run: | | |
| GITHUB_REPO=$(basename ${{ github.repository }}) | |
| GIT_SHORT_HASH=$(git rev-parse --short HEAD) | |
| echo ::set-output name=name::${GITHUB_REPO}:${GIT_SHORT_HASH} | |
| - name: Build image locally with jib | |
| run: | | |
| ./gradlew --build-cache :service:jibDockerBuild \ | |
| --image=${{ steps.image-name.outputs.name }} \ | |
| -Djib.console=plain | |
| - name: Run Trivy vulnerability scanner | |
| uses: broadinstitute/dsp-appsec-trivy-action@v1 | |
| with: | |
| image: ${{ steps.image-name.outputs.name }} | |
| tests-and-sonarqube: | |
| needs: [ bump-check, build ] | |
| runs-on: ubuntu-latest | |
| if: needs.bump-check.outputs.is-bump == 'no' | |
| services: | |
| postgres: | |
| image: postgres:13.1 | |
| env: | |
| POSTGRES_PASSWORD: postgres | |
| options: >- | |
| --health-cmd pg_isready | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| ports: | |
| - 5432:5432 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| # Needed by sonar to get the git history for the branch the PR will be merged into. | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up JDK | |
| uses: actions/setup-java@v2 | |
| with: | |
| java-version: '17' | |
| distribution: 'temurin' | |
| cache: 'gradle' | |
| - name: initialize the database | |
| env: | |
| PGPASSWORD: postgres | |
| run: | | |
| psql -h localhost -U postgres -f ./scripts/postgres-init.sql | |
| - name: Test with coverage | |
| run: ./gradlew --build-cache service:test jacocoTestReport --scan | |
| # The SonarQube scan is done here, so it can upload the coverage report generated by the tests. | |
| - name: SonarQube scan | |
| run: ./gradlew --build-cache sonarqube | |
| env: | |
| SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }} | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| notify-slack: | |
| needs: [ bump-check, build, tests-and-sonarqube ] | |
| runs-on: ubuntu-latest | |
| if: failure() && github.event_name == 'push' && needs.bump-check.outputs.is-bump == 'no' | |
| steps: | |
| - name: Notify WSM Slack on Failure | |
| uses: broadinstitute/[email protected] | |
| # see https://github.com/broadinstitute/action-slack | |
| env: | |
| SLACK_WEBHOOK_URL: ${{ secrets.SLACK_WEBHOOK_URL }} | |
| with: | |
| status: failure | |
| channel: "#terra-tsps-alerts" | |
| username: "Teaspoons push to main branch" | |
| author_name: "build-and-test" | |
| icon_emoji: ":triangular_ruler:" | |
| fields: job, commit |