TSPS-328 add optional samples subselection to SubsetVcfByBedFile WDL #138
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jsotobroad
reviewed
Oct 8, 2024
| version 1.0 | ||
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| # This script is under review. It is not actively tested or maintained at this time. | ||
| workflow UpdateVcfHeaderContigs { |
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maybe UpdateVcfDictionaryHeader or UpsertVcfDictionaryHeader
| } | ||
| } | ||
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| task UpdateHeader { |
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same follow through as the other name of the wdl
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oh and can we update the readme with the input change and the new wdl |
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jsotobroad
approved these changes
Oct 8, 2024
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Description
WDL updates to SubsetVcfByBedFile (masking wdl) to allow subsetting by samples.
Add new WDL: UpdateVcfDictionaryHeader, to update a VCF's headers to include the proper contigs as specified by a reference dictionary.
Jira Ticket
https://broadworkbench.atlassian.net/browse/TSPS-328