Use the latest greatest Python deps (#1618)

Fixes #1573

This only fixes us to the first version of pandera that supports numpy
2, the rest should follow automatically.

I took longer than I want to admit to find that the previous `[None, 1]`
is now silently coerced to `[0,1]` and therefore passed validation, and
failed the test.

I also (still?) see
```
tests/test_model.py::test_xugrid[model0]
  <frozen importlib._bootstrap>:488: RuntimeWarning: numpy.ndarray size changed, may indicate binary incompatibility. Expected 16 from C header, got 96 from PyObject
```

Which is probably due to xugrid/netcdf/meshkernel(?) using something
compiled against a different numpy version.

---------

Co-authored-by: Martijn Visser <[email protected]>

pixi.toml

@@ -20,7 +20,7 @@ test-ribasim-api = "pytest --basetemp=python/ribasim_api/tests/temp --junitxml=r
 
 [feature.dev.tasks]
 # Installation
-install-julia = "juliaup add 1.10.4 && juliaup override set 1.10.4"
+install-julia = "juliaup add 1.10.4 && juliaup override unset && juliaup override set 1.10.4"
 install-pre-commit = "pre-commit install"
 install-ci = { depends_on = ["install-julia", "update-registry-julia"] }
 install = { depends_on = [
@@ -156,9 +156,9 @@ netCDF4 = "*"
 numpy = "*"
 pandas = "*"
 pandas-stubs = "*"
-pandera = ">=0.18"
+pandera = ">=0.20"
 pip = "*"
-pyarrow = "<15"
+pyarrow = "*"
 pydantic = ">=2"
 pyogrio = "*"
 pytest = "*"

python/ribasim/pyproject.toml

@@ -20,7 +20,7 @@ dependencies = [
     "matplotlib",
     "numpy",
     "pandas",
-    "pandera >= 0.18",
+    "pandera >= 0.20",
     "pyarrow",
     "pydantic ~= 2.0",
     "pyogrio",

python/ribasim/ribasim/geometry/edge.py

@@ -25,7 +25,7 @@ class NodeData(NamedTuple):
     geometry: Point
 
 
-class EdgeSchema(pa.SchemaModel):
+class EdgeSchema(pa.DataFrameModel):
     name: Series[str] = pa.Field(default="")
     from_node_type: Series[str] = pa.Field(nullable=True)
     from_node_id: Series[Int32] = pa.Field(default=0, coerce=True)

python/ribasim/ribasim/geometry/node.py

@@ -15,7 +15,7 @@
 __all__ = ("NodeTable",)
 
 
-class NodeSchema(pa.SchemaModel):
+class NodeSchema(pa.DataFrameModel):
     node_id: Series[Int32] = pa.Field(ge=0)
     name: Series[str] = pa.Field(default="")
     node_type: Series[str] = pa.Field(default="")

python/ribasim/tests/test_edge.py

@@ -24,7 +24,10 @@ def test_validation(edge):
 
     with pytest.raises(ValidationError):
         df = gpd.GeoDataFrame(
-            data={"from_node_id": [1, 1], "to_node_id": [None, 3]},
+            data={
+                "from_node_id": [1, 1],
+                "to_node_id": ["foo", 3],
+            },  # None is coerced to 0 without errors
             geometry=[None, None],
         )
         EdgeTable(df=df)