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Fixes #967. Blocking for merge: #1006. Note to @visr and others working on flow visualization in QGIS: although this yields a flow output file, it is different from the flow output file for several reasons: - There are demand gathering flows and allocation flows (which yields 2 flow values for each edge in a subnetwork for each allocation timestep) - (For now) an edge connecting the main network to the subnetwork yields flows from both the main network and the subnetwork.
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