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Keep only the root and core project #1021

Merged
merged 13 commits into from
Feb 1, 2024
Merged

Keep only the root and core project #1021

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c2b2f16
Fold create_binaries into root project
visr Jan 31, 2024
92eddaa
Fold ribasim_cli into root project
visr Jan 31, 2024
be64b6b
Fold libribasim into core project
visr Jan 31, 2024
3de55da
Remove create_binaries and move contents up
visr Jan 31, 2024
462cb03
Update paths for create_binaries move
visr Jan 31, 2024
c5397d8
Add all core deps as direct root deps
visr Jan 31, 2024
a76ba6b
Get readme from docstring
visr Feb 1, 2024
06a3928
io
visr Feb 1, 2024
58c01dd
add main()
visr Feb 1, 2024
7859ef6
Update the manifest
visr Feb 1, 2024
1f50103
Fix path in test_models.py
visr Feb 1, 2024
d7f7231
Merge branch 'main' into root-of-all
visr Feb 1, 2024
b892c26
Merge branch 'main' into root-of-all
visr Feb 1, 2024
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5 changes: 1 addition & 4 deletions .github/workflows/core_compat_helper.yml
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Expand Up @@ -38,11 +38,8 @@ jobs:
run: |
import CompatHelper
CompatHelper.main(; subdirs=[
".",
"core",
"docs",
"build/create_binaries",
"build/libribasim",
"build/ribasim_cli"
])
shell: julia --color=yes {0}
env:
Expand Down
6 changes: 3 additions & 3 deletions .gitignore
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Expand Up @@ -10,8 +10,8 @@ docs/build/
docs/site/

/generated_testmodels
build/create_binaries/ribasim_cli/
build/create_binaries/libribasim/
build/ribasim_cli/
build/libribasim/

JuliaSysimage.dll
LocalPreferences.toml
Expand Down Expand Up @@ -147,7 +147,7 @@ dmypy.json
.pyre/

/.luarc.json
build/ribasim_cli/tests/temp/
build/tests/temp/
python/ribasim_api/tests/temp/
report.xml
/utils/juliaup
Expand Down
2 changes: 1 addition & 1 deletion .teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildLibribasim.xml
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Expand Up @@ -4,7 +4,7 @@
<description />
<settings>
<options>
<option name="artifactRules" value="ribasim\build\create_binaries\libribasim =&gt; libribasim.zip" />
<option name="artifactRules" value="ribasim\build\libribasim =&gt; libribasim.zip" />
<option name="cleanBuild" value="true" />
<option name="executionTimeoutMin" value="120" />
<option name="publishArtifactCondition" value="SUCCESSFUL" />
Expand Down
4 changes: 2 additions & 2 deletions .teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildRibasimCli.xml
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Expand Up @@ -4,7 +4,7 @@
<description />
<settings>
<options>
<option name="artifactRules" value="ribasim\build/create_binaries/ribasim_cli =&gt; ribasim_cli_linux.zip" />
<option name="artifactRules" value="ribasim\build/ribasim_cli =&gt; ribasim_cli_linux.zip" />
<option name="cleanBuild" value="true" />
<option name="executionTimeoutMin" value="120" />
</options>
Expand Down Expand Up @@ -42,7 +42,7 @@ pixi run build-ribasim-cli]]></param>
<runner id="RUNNER_1932" name="Get version from Ribasim" type="simpleRunner">
<parameters>
<param name="script.content" value="./ribasim --version" />
<param name="teamcity.build.workingDir" value="ribasim/build/create_binaries/ribasim_cli/bin" />
<param name="teamcity.build.workingDir" value="ribasim/build/ribasim_cli/bin" />
<param name="teamcity.step.mode" value="default" />
<param name="use.custom.script" value="true" />
</parameters>
Expand Down
2 changes: 1 addition & 1 deletion .teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimApi.xml
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Expand Up @@ -93,7 +93,7 @@ pixi run test-ribasim-api]]></param>
<artifact-dependencies>
<dependency id="ARTIFACT_DEPENDENCY_570" sourceBuildTypeId="Ribasim_Linux_BuildLibribasim" cleanDestination="true">
<revisionRule name="sameChainOrLastFinished" revision="latest.sameChainOrLastFinished" />
<artifact sourcePath="libribasim.zip!** =&gt; ribasim/build/create_binaries/libribasim&#xD;&#xA;" />
<artifact sourcePath="libribasim.zip!** =&gt; ribasim/build/libribasim&#xD;&#xA;" />
</dependency>
</artifact-dependencies>
<dependencies>
Expand Down
4 changes: 2 additions & 2 deletions .teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimCli.xml
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Expand Up @@ -4,7 +4,7 @@
<description />
<settings>
<options>
<option name="artifactRules" value="ribasim\build\ribasim_cli\tests\temp =&gt; test_output.zip" />
<option name="artifactRules" value="ribasim\build\tests\temp =&gt; test_output.zip" />
<option name="cleanBuild" value="true" />
</options>
<parameters>
Expand Down Expand Up @@ -93,7 +93,7 @@ pixi run test-ribasim-cli]]></param>
<artifact-dependencies>
<dependency id="ARTIFACT_DEPENDENCY_570" sourceBuildTypeId="Ribasim_Linux_BuildRibasimCli" cleanDestination="true">
<revisionRule name="sameChainOrLastFinished" revision="latest.sameChainOrLastFinished" />
<artifact sourcePath="ribasim_cli_linux.zip!** =&gt; ribasim/build/create_binaries/ribasim_cli&#xD;&#xA;" />
<artifact sourcePath="ribasim_cli_linux.zip!** =&gt; ribasim/build/ribasim_cli&#xD;&#xA;" />
</dependency>
</artifact-dependencies>
<dependencies>
Expand Down
2 changes: 1 addition & 1 deletion .teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildLibribasim.xml
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Expand Up @@ -4,7 +4,7 @@
<description />
<settings>
<options>
<option name="artifactRules" value="ribasim\build\create_binaries\libribasim =&gt; libribasim.zip" />
<option name="artifactRules" value="ribasim\build\libribasim =&gt; libribasim.zip" />
<option name="cleanBuild" value="true" />
<option name="executionTimeoutMin" value="120" />
<option name="publishArtifactCondition" value="SUCCESSFUL" />
Expand Down
4 changes: 2 additions & 2 deletions .teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildRibasimCli.xml
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Expand Up @@ -4,7 +4,7 @@
<description />
<settings>
<options>
<option name="artifactRules" value="ribasim\build/create_binaries/ribasim_cli =&gt; ribasim_cli_windows.zip" />
<option name="artifactRules" value="ribasim\build/ribasim_cli =&gt; ribasim_cli_windows.zip" />
<option name="cleanBuild" value="true" />
<option name="executionTimeoutMin" value="120" />
</options>
Expand All @@ -30,7 +30,7 @@ pixi run build-ribasim-cli]]></param>
<runner id="RUNNER_1932" name="Get version from Ribasim" type="simpleRunner">
<parameters>
<param name="script.content" value="ribasim --version" />
<param name="teamcity.build.workingDir" value="ribasim/build/create_binaries/ribasim_cli" />
<param name="teamcity.build.workingDir" value="ribasim/build/ribasim_cli" />
<param name="teamcity.step.mode" value="default" />
<param name="use.custom.script" value="true" />
</parameters>
Expand Down
2 changes: 1 addition & 1 deletion .teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimApi.xml
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Expand Up @@ -82,7 +82,7 @@
<artifact-dependencies>
<dependency id="ARTIFACT_DEPENDENCY_570" sourceBuildTypeId="Ribasim_Windows_BuildLibribasim" cleanDestination="true">
<revisionRule name="sameChainOrLastFinished" revision="latest.sameChainOrLastFinished" />
<artifact sourcePath="libribasim.zip!** =&gt; ribasim/build/create_binaries/libribasim&#xD;&#xA;" />
<artifact sourcePath="libribasim.zip!** =&gt; ribasim/build/libribasim&#xD;&#xA;" />
</dependency>
</artifact-dependencies>
<dependencies>
Expand Down
4 changes: 2 additions & 2 deletions .teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimCli.xml
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Expand Up @@ -4,7 +4,7 @@
<description />
<settings>
<options>
<option name="artifactRules" value="ribasim\build\ribasim_cli\tests\temp =&gt; test_output.zip" />
<option name="artifactRules" value="ribasim\build\tests\temp =&gt; test_output.zip" />
<option name="cleanBuild" value="true" />
</options>
<parameters>
Expand Down Expand Up @@ -82,7 +82,7 @@
<artifact-dependencies>
<dependency id="ARTIFACT_DEPENDENCY_570" sourceBuildTypeId="Ribasim_Windows_BuildRibasimCli" cleanDestination="true">
<revisionRule name="sameChainOrLastFinished" revision="latest.sameChainOrLastFinished" />
<artifact sourcePath="ribasim_cli_windows.zip!** =&gt; ribasim/build/create_binaries/ribasim_cli&#xD;&#xA;" />
<artifact sourcePath="ribasim_cli_windows.zip!** =&gt; ribasim/build/ribasim_cli&#xD;&#xA;" />
</dependency>
</artifact-dependencies>
<dependencies>
Expand Down
82 changes: 33 additions & 49 deletions Manifest.toml
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Expand Up @@ -2,7 +2,7 @@

julia_version = "1.10.0"
manifest_format = "2.0"
project_hash = "1a68754569dae741c9232c9ae2db3512f52c2b80"
project_hash = "7e18cea33bf679231c5c94c6b99a1b635f9a1b61"

[[deps.ADTypes]]
git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245"
Expand Down Expand Up @@ -150,9 +150,9 @@ version = "0.2.4"

[[deps.ChainRulesCore]]
deps = ["Compat", "LinearAlgebra"]
git-tree-sha1 = "c1deebd76f7a443d527fc0430d5758b8b2112ed8"
git-tree-sha1 = "1287e3872d646eed95198457873249bd9f0caed2"
uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
version = "1.19.1"
version = "1.20.1"
weakdeps = ["SparseArrays"]

[deps.ChainRulesCore.extensions]
Expand All @@ -172,9 +172,9 @@ version = "1.3.5"

[[deps.CodecBzip2]]
deps = ["Bzip2_jll", "Libdl", "TranscodingStreams"]
git-tree-sha1 = "c0ae2a86b162fb5d7acc65269b469ff5b8a73594"
git-tree-sha1 = "9b1ca1aa6ce3f71b3d1840c538a8210a043625eb"
uuid = "523fee87-0ab8-5b00-afb7-3ecf72e48cfd"
version = "0.8.1"
version = "0.8.2"

[[deps.CodecLz4]]
deps = ["Lz4_jll", "TranscodingStreams"]
Expand All @@ -184,9 +184,9 @@ version = "0.4.1"

[[deps.CodecZlib]]
deps = ["TranscodingStreams", "Zlib_jll"]
git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8"
git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73"
uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
version = "0.7.3"
version = "0.7.4"

[[deps.CodecZstd]]
deps = ["TranscodingStreams", "Zstd_jll"]
Expand Down Expand Up @@ -355,9 +355,9 @@ uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"

[[deps.Dictionaries]]
deps = ["Indexing", "Random", "Serialization"]
git-tree-sha1 = "5bde104a45593207307e1481a58e0339d4643fca"
git-tree-sha1 = "8b73c5a704d74e78a114b785d648ceba1e5790a9"
uuid = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4"
version = "0.3.26"
version = "0.4.0"

[[deps.DiffEqBase]]
deps = ["ArrayInterface", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"]
Expand Down Expand Up @@ -497,9 +497,9 @@ version = "0.3.2"

[[deps.FastLapackInterface]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "b12f05108e405dadcc2aff0008db7f831374e051"
git-tree-sha1 = "d576a29bf8bcabf4b1deb9abe88a3d7f78306ab5"
uuid = "29a986be-02c6-4525-aec4-84b980013641"
version = "2.0.0"
version = "2.0.1"

[[deps.FileIO]]
deps = ["Pkg", "Requires", "UUIDs"]
Expand Down Expand Up @@ -939,9 +939,9 @@ version = "1.1.0"

[[deps.MathOptInterface]]
deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"]
git-tree-sha1 = "e2ae8cf5ac6daf5a3959f7f6ded9c2028b61d09d"
git-tree-sha1 = "8b40681684df46785a0012d352982e22ac3be59e"
uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee"
version = "1.25.1"
version = "1.25.2"

[[deps.MatrixFactorizations]]
deps = ["ArrayLayouts", "LinearAlgebra", "Printf", "Random"]
Expand Down Expand Up @@ -1026,9 +1026,9 @@ version = "1.2.0"

[[deps.NonlinearSolve]]
deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "TimerOutputs"]
git-tree-sha1 = "78bdd3a4a62865cf43c53d63783b0cbfddcdbbe6"
git-tree-sha1 = "323d2a61f4adc4dfe404bf332b59690253b4f4f2"
uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec"
version = "3.5.0"
version = "3.5.3"

[deps.NonlinearSolve.extensions]
NonlinearSolveBandedMatricesExt = "BandedMatrices"
Expand Down Expand Up @@ -1086,9 +1086,9 @@ version = "1.6.3"

[[deps.OrdinaryDiffEq]]
deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"]
git-tree-sha1 = "7c6738f21fba2ccd07b7eaa9d23b437a8a97f1a1"
git-tree-sha1 = "c971a69e5eea2eba435b55e962c283f15502a0c8"
uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
version = "6.69.0"
version = "6.70.0"

[[deps.PackageCompiler]]
deps = ["Artifacts", "Glob", "LazyArtifacts", "Libdl", "Pkg", "Printf", "RelocatableFolders", "TOML", "UUIDs", "p7zip_jll"]
Expand Down Expand Up @@ -1191,9 +1191,9 @@ uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"

[[deps.ReTestItems]]
deps = ["Dates", "Logging", "LoggingExtras", "Pkg", "Serialization", "Sockets", "Test", "TestEnv"]
git-tree-sha1 = "68a7d4fd86f12c2fc6dec60d566f033a10ffb5fb"
git-tree-sha1 = "32138ef9f7205330693b0e8e366370c470b2285d"
uuid = "817f1d60-ba6b-4fd5-9520-3cf149f6a823"
version = "1.23.0"
version = "1.23.1"

[[deps.RecipesBase]]
deps = ["PrecompileTools"]
Expand All @@ -1203,21 +1203,23 @@ version = "1.3.4"

[[deps.RecursiveArrayTools]]
deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"]
git-tree-sha1 = "dd7fc1923fde0cc6cdff451352d17924b0704ca1"
git-tree-sha1 = "5a904ad526cc9a2c5b464f6642ce9dd230fd69b6"
uuid = "731186ca-8d62-57ce-b412-fbd966d074cd"
version = "3.5.4"
version = "3.7.0"

[deps.RecursiveArrayTools.extensions]
RecursiveArrayToolsFastBroadcastExt = "FastBroadcast"
RecursiveArrayToolsMeasurementsExt = "Measurements"
RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements"
RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"]
RecursiveArrayToolsTrackerExt = "Tracker"
RecursiveArrayToolsZygoteExt = "Zygote"

[deps.RecursiveArrayTools.weakdeps]
FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898"
Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7"
MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca"
ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267"
Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c"
Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"

Expand Down Expand Up @@ -1285,15 +1287,15 @@ version = "1.6.0"

[[deps.SQLite_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"]
git-tree-sha1 = "81f7d934b52b2441f7b44520bd982fdb3607b0da"
git-tree-sha1 = "75e28667a36b5650b5cc4baa266c5760c3672275"
uuid = "76ed43ae-9a5d-5a62-8c75-30186b810ce8"
version = "3.43.0+0"
version = "3.45.0+0"

[[deps.SciMLBase]]
deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"]
git-tree-sha1 = "de41474ac529bf81598e064587421cc5ebc28fa0"
git-tree-sha1 = "e4344257d8a9dfc92e0fc113f0a5bababa8d2082"
uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
version = "2.20.0"
version = "2.22.0"

[deps.SciMLBase.extensions]
SciMLBaseChainRulesCoreExt = "ChainRulesCore"
Expand Down Expand Up @@ -1441,9 +1443,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"]

[[deps.StaticArrays]]
deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"]
git-tree-sha1 = "f68dd04d131d9a8a8eb836173ee8f105c360b0c5"
git-tree-sha1 = "7b0e9c14c624e435076d19aea1e5cbdec2b9ca37"
uuid = "90137ffa-7385-5640-81b9-e52037218182"
version = "1.9.1"
version = "1.9.2"
weakdeps = ["ChainRulesCore", "Statistics"]

[deps.StaticArrays.extensions]
Expand Down Expand Up @@ -1500,9 +1502,9 @@ uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c"
version = "7.2.1+1"

[[deps.SymbolicIndexingInterface]]
git-tree-sha1 = "74502f408d99fc217a9d7cd901d9ffe45af892b1"
git-tree-sha1 = "b3103f4f50a3843e66297a2456921377c78f5e31"
uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5"
version = "0.3.3"
version = "0.3.5"

[[deps.TOML]]
deps = ["Dates"]
Expand All @@ -1511,9 +1513,9 @@ version = "1.0.3"

[[deps.TZJData]]
deps = ["Artifacts"]
git-tree-sha1 = "d39314cdbaf5b90a047db33858626f8d1cc973e1"
git-tree-sha1 = "b69f8338df046774bd975b13be9d297eca5efacb"
uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7"
version = "1.0.0+2023c"
version = "1.1.0+2023d"

[[deps.TableTraits]]
deps = ["IteratorInterfaceExtensions"]
Expand Down Expand Up @@ -1656,23 +1658,11 @@ git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c"
uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
version = "1.5.5+0"

[[deps.create_binaries]]
deps = ["Artifacts", "LibGit2", "PackageCompiler", "TOML", "TimeZones"]
path = "build/create_binaries"
uuid = "3cfb6a46-05f0-43df-bb16-bf763deb14b4"
version = "0.1.0"

[[deps.libblastrampoline_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
version = "5.8.0+1"

[[deps.libribasim]]
deps = ["BasicModelInterface", "Dates", "Ribasim", "TOML"]
path = "build/libribasim"
uuid = "f319f290-633d-4573-adfe-d6d5548b6388"
version = "0.1.0"

[[deps.libsodium_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "848ab3d00fe39d6fbc2a8641048f8f272af1c51e"
Expand All @@ -1688,9 +1678,3 @@ version = "1.52.0+1"
deps = ["Artifacts", "Libdl"]
uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
version = "17.4.0+2"

[[deps.ribasim_cli]]
deps = ["Dates", "Logging", "Ribasim", "SciMLBase", "TOML", "TerminalLoggers"]
path = "build/ribasim_cli"
uuid = "e45c999e-e944-4589-a8e6-7d0b7a60140a"
version = "0.1.0"
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