v2.4.40 #1077
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name: Testing | |
on: [push, pull_request] | |
env: | |
EMG_CONFIG: ${{ github.workspace }}/ci/configuration.yaml | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: [3.8, 3.9] | |
steps: | |
- uses: actions/checkout@v3 | |
- name: 🐍 - Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: 💾 Start MongoDB | |
uses: supercharge/mongodb-github-action@1.3.0 | |
with: | |
mongodb-version: 4.0.6 | |
- name: ⚙️ - Checking environment | |
run: | | |
python -V | |
sudo systemctl start mysql | |
mysql --version | |
mysql -uroot -proot -e 'CREATE DATABASE emg;' | |
mysql -uroot -proot -e "SET GLOBAL sql_mode = 'STRICT_TRANS_TABLES'" | |
- name: 🔧 - Install Dependencies | |
run: | | |
pip install install .[tests] | |
pip freeze | |
- name: 🧪 - Testing | |
run: | | |
cat $EMG_CONFIG | |
pytest | |
# TODO: disabled until black formatting completed and all flake issues fixed | |
# - name: Flake | |
# continue-on-error: true | |
# run: | | |
# flake8 --version | |
# flake8 -v . | |
- name: 📮 - Slack Notification | |
uses: rtCamp/action-slack-notify@v2 | |
continue-on-error: true | |
if: github.ref == 'refs/heads/master' || github.ref == 'refs/heads/develop' | |
env: | |
SLACK_COLOR: "${{ job.status == 'success' && 'good' || 'danger' }}" | |
SLACK_USERNAME: "Github Actions API" | |
SLACK_ICON_EMOJI: ":octocat:" | |
SLACK_TITLE: "CI API results in GitHub Actions" | |
SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }} | |
SLACK_CHANNEL: "#metagenomics-notify" | |
MSG_MINIMAL: Actions URL |