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v2.4.40

v2.4.40 #1077

Workflow file for this run

name: Testing
on: [push, pull_request]
env:
EMG_CONFIG: ${{ github.workspace }}/ci/configuration.yaml
jobs:
build:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: [3.8, 3.9]
steps:
- uses: actions/checkout@v3
- name: 🐍 - Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: 💾 Start MongoDB
uses: supercharge/mongodb-github-action@1.3.0
with:
mongodb-version: 4.0.6
- name: ⚙️ - Checking environment
run: |
python -V
sudo systemctl start mysql
mysql --version
mysql -uroot -proot -e 'CREATE DATABASE emg;'
mysql -uroot -proot -e "SET GLOBAL sql_mode = 'STRICT_TRANS_TABLES'"
- name: 🔧 - Install Dependencies
run: |
pip install install .[tests]
pip freeze
- name: 🧪 - Testing
run: |
cat $EMG_CONFIG
pytest
# TODO: disabled until black formatting completed and all flake issues fixed
# - name: Flake
# continue-on-error: true
# run: |
# flake8 --version
# flake8 -v .
- name: 📮 - Slack Notification
uses: rtCamp/action-slack-notify@v2
continue-on-error: true
if: github.ref == 'refs/heads/master' || github.ref == 'refs/heads/develop'
env:
SLACK_COLOR: "${{ job.status == 'success' && 'good' || 'danger' }}"
SLACK_USERNAME: "Github Actions API"
SLACK_ICON_EMOJI: ":octocat:"
SLACK_TITLE: "CI API results in GitHub Actions"
SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }}
SLACK_CHANNEL: "#metagenomics-notify"
MSG_MINIMAL: Actions URL