Add check for missing records in DB (by some reason?)

EBI-Metagenomics · Jun 6, 2024 · ec096dd · ec096dd
1 parent 0201c09
commit ec096dd
Showing 1 changed file with 13 additions and 3 deletions.
diff --git a/emgapi/management/commands/populate_metagenomics_exchange.py b/emgapi/management/commands/populate_metagenomics_exchange.py
@@ -174,9 +174,19 @@ def process_to_index_and_update_records(self, analyses_to_index_and_update):
                         else:
                             logging.error(f"Analysis {annotation_job} update failed")
                     else:
-                        logging.debug(
-                            f"No edit for {annotation_job}, metadata is correct"
-                        )
+                        if annotation_job.mgx_accession and annotation_job.last_mgx_indexed:
+                            logging.info(
+                                f"No edit for {annotation_job}, metadata is correct"
+                            )
+                        else:
+                            logging.info(
+                                f"Metadata is correct but {annotation_job} is missing in DB. Adding."
+                            )
+                            annotation_job.mgx_accession = registry_id
+                            annotation_job.last_mgx_indexed = (
+                                    timezone.now() + timedelta(minutes=1)
+                            )
+                            jobs_to_update.append(annotation_job)
 
             AnalysisJob.objects.bulk_update(
                 jobs_to_update,