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Workaround to query ENA / ERAPRO Views. #333

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Nov 1, 2023
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Workaround to query ENA / ERAPRO Views. #333

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12 changes: 10 additions & 2 deletions emgena/models.py
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Original file line number Diff line number Diff line change
Expand Up @@ -194,12 +194,20 @@ class Meta:

class RunStudy(StudyAbstract):
class Meta(StudyAbstract.Meta):
db_table = 'V_MGP_RUN_STUDY'
# ERA needs to be appended as the default connection tries to use
# the PUBLIC SYNONYM (according to ENA) and it's not working ATM
# we were advised to prefix the views and this is the simplest way.
# The short-term plan is to remove the dependency of ENA databases
db_table = 'ERA\".\"V_MGP_RUN_STUDY'


class AssemblyStudy(StudyAbstract):
class Meta(StudyAbstract.Meta):
db_table = 'V_MGP_ASSEMBLY_STUDY'
# ERA needs to be appended as the default connection tries to use
# the PUBLIC SYNONYM (according to ENA) and it's not working ATM
# we were advised to prefix the views and this is the simplest way.
# The short-term plan is to remove the dependency of ENA databases
db_table = 'ERA\".\"V_MGP_ASSEMBLY_STUDY'


class Project(models.Model):
Expand Down