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Add skipping mechanism for list of studies #360
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Original file line number | Diff line number | Diff line change |
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|
@@ -108,14 +108,20 @@ def add_analysis(self, mgya: str, sequence_accession: str): | |
data = self.generate_metadata(mgya, sequence_accession) | ||
try: | ||
response = self.post_request(endpoint="datasets", data=data) | ||
response.raise_for_status() # Ensure we raise for HTTP errors | ||
return response | ||
except HTTPError as http_error: | ||
try: | ||
response_json = http_error.response.json() | ||
logging.error(f"API response content: {response_json}") | ||
except: | ||
pass | ||
raise http_error | ||
return response | ||
except ValueError: # Catch JSON decoding errors | ||
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. Wouldn't this raise an There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. you are right, one is a subclass of another. Fixed! |
||
logging.error(f"Failed to decode JSON from response: {http_error.response.text}") | ||
except Exception as e: | ||
logging.error(f"Unexpected error: {e}") | ||
|
||
# Log the HTTP status code and the error message | ||
logging.error(f"HTTPError occurred: {http_error}") | ||
return None | ||
|
||
def check_analysis(self, mgya: str, sequence_accession: str, metadata=None): | ||
"""Check if a sequence exists in the M. Exchange | ||
|
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I suppose it is bad enough for a warning :)