v2.7.0

• End-to-end tests for evidence string pipeline
• Automated deployment to EBI cluster
• Automation in Nextflow of technical steps in manual curation protocol
• Update ClinVar variant types diagrams, plus other investigations
• Bump OT schema version in preparation for November submission

v2.6.0

Merge pull request #337 from apriltuesday/issue-333

Convert evidence string generation to Nextflow

v2.5.4

Fixes for June submission and update to OT json schema version.

v2.5.3

• Add number of structural variants to metrics
• Use Ensembl API for retrieving consequence severity ranking
• Use OLS for retrieving SO accessions
• Update strategy for filtering consequences based on severity, now reports all overlapping genes along with most severe consequence
• Bump OT json schema version for 2022.06 submission

v2.5.2

Bump Open Targets JSON schema version for April (the month!) submission.

v2.5.1

Bug fixes relating to new structural variants pipeline.

v2.5.0

• Extract clinvar_xml_io into separate module
• New consequence mapping pipeline for precise structural variants
• Update to OT JSON schema 2.2.0

v2.4.1

Bug fixes related to the new VEP version, in particular skipping ambiguous IUPAC bases and handling new consequence terms properly in tests.

v2.4.0

• Integrate repeat expansion pipeline into main pipeline
• Update to evidence string comparison protocol
• Update to Ensembl 105
• Update to OT JSON schema 2.1.0

v2.3.0

• Update evidence string duplication checks to use diseaseFromSource
• Update repeat expansion pipeline behaviour for measures missing name attribute - now falls back on HGVS and REF/ALT
• Modify trait mapping to integrate with future manual curation platform
• Migrate all tests to pytest
• Documentation updates and bug fixes following 21.06 submission