Releases: EBIvariation/CMAT
Releases · EBIvariation/CMAT
v1.1: Drop support for haplotypes and gene2variant→resource_score section
- #128 Expand distribution diagrams of various attributes in ClinVar data with clinical significance, star rating, and mode of inheritance.
- #135 Drop existing support for haplotypes, since it handled all variants of a haplotype as though they were independent. As can be seen in the report, haplotypes only account for a very minor fraction of ClinVar variants.
- #136 Remove the
resource_score
section fromgene2variant
. This contained a placeholder value, which started to cause problems after recent updates of OT JSON schema.
v1.0: Inaugural release for the mono repository
After about 5 years of development of this pipeline, it's probably about time to start doing the formal versioning and releases. Recently I merged everything into one mono repository (this one) and renamed it to eva-opentargets. It contains:
- The core pipeline used to process ClinVar data and generate Open Targets submission → eva_cttv_pipeline;
- Batch submission and manual curation documentation → docs;
- Helper pipelines for querying VEP and for processing repeat expansion variants → vep-mapping-pipeline;
- Scripts for analysing the ClinVar data model → clinvar-variant-types;
- Helper scripts for comparing sets of Open Targets evidence strings → compare-evidence-strings.
The versioning scheme used will more or less comply to the semantic versioning approach.