Removed parameters that are not used as job parameters

EBIvariation · Feb 24, 2017 · ebc5194 · ebc5194
1 parent 6da3369
commit ebc5194
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diff --git a/src/main/java/uk/ac/ebi/eva/pipeline/parameters/InputParameters.java b/src/main/java/uk/ac/ebi/eva/pipeline/parameters/InputParameters.java
@@ -59,14 +59,6 @@ public class InputParameters {
     @Value(PARAMETER + JobParametersNames.INPUT_VCF_AGGREGATION_MAPPING_PATH + OR_NULL)
     private String aggregatedMappingFile;
 
-    // maybe the next three could go into a ConfigurationParameters?
-
-    @Value(PARAMETER + JobParametersNames.APP_OPENCGA_PATH  + END)
-    private String opencgaAppHome;
-
-    @Value(PARAMETER + JobParametersNames.CONFIG_RESTARTABILITY_ALLOW + "']?:false}")
-    private boolean allowStartIfComplete;
-
     @Value(PARAMETER + JobParametersNames.CONFIG_CHUNK_SIZE + "']?:1000}")
     private int chunkSize;
 
@@ -94,14 +86,6 @@ public VariantStudy.StudyType getStudyType() {
         return studyType;
     }
 
-    public String getOpencgaAppHome() {
-        return opencgaAppHome;
-    }
-
-    public boolean isAllowStartIfComplete() {
-        return allowStartIfComplete;
-    }
-
     public int getChunkSize() {
         return chunkSize;
     }

diff --git a/src/main/java/uk/ac/ebi/eva/pipeline/parameters/JobOptions.java b/src/main/java/uk/ac/ebi/eva/pipeline/parameters/JobOptions.java
@@ -15,9 +15,7 @@
  */
 package uk.ac.ebi.eva.pipeline.parameters;
 
-import org.opencb.datastore.core.ObjectMap;
 import org.opencb.opencga.lib.common.Config;
-import org.opencb.opencga.storage.core.variant.VariantStorageManager;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 import org.springframework.beans.factory.annotation.Value;