Merge pull request #57 from apriltuesday/fix-upgrade-2

Fix generate_csv_mappings
EBIvariation · Jul 15, 2021 · 463f06b · 463f06b
2 parents 96c592b + 2466707
commit 463f06b
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/eva_submission/eload_ingestion.py b/eva_submission/eload_ingestion.py
@@ -273,7 +273,7 @@ def _generate_csv_mappings_to_ingest(self):
                     for vcf_file in analysis_data['vcf_files']:
                         writer.writerow([vcf_file, assembly_accession, fasta, report, analysis_accession, db_name])
                 else:
-                    self.warning(f"File {vcf_file} not found")
+                    self.warning(f"VCF files for analysis {analysis_alias} not found")
         return vcf_files_to_ingest
 
     def run_accession_workflow(self, vcf_files_to_ingest):

diff --git a/eva_submission/eload_validation.py b/eva_submission/eload_validation.py
@@ -137,7 +137,7 @@ def _generate_csv_mappings(self):
                     for vcf_file in analysis_data['vcf_files']:
                         writer.writerow([vcf_file, fasta, report])
                 else:
-                    self.warning(f"File {vcf_file} not found")
+                    self.warning(f"VCF files for analysis {analysis_alias} not found")
         return vcf_files_mapping_csv
 
     def _run_validation_workflow(self):