Skip to content
@ENCODE-AWG

ENCODE-AWG

Popular repositories Loading

  1. encode-202006-jamboree-detrout-rna-sc-pipeline encode-202006-jamboree-detrout-rna-sc-pipeline Public

    My efforts at getting the single cell RNA seq pipelines to run

    Jupyter Notebook 1

  2. locusselect locusselect Public

    Forked from kundajelab/locusselect

    extraction of data embeddings from deep learning model layers; computation of embedding distance and visualization with umap/tsne

    Jupyter Notebook

  3. locusselect_applications locusselect_applications Public

    wrapper scripts, examples, jupyter notebooks for locusselect project. The locusselect repo contains the core functional python scripts needed for locus selection.This repo provides a way to track a…

    Jupyter Notebook

  4. HiCSampler HiCSampler Public

    Forked from JRowleyLab/HiCSampler

    Python 1

  5. nawg_distal_reg_enhancer_synergy nawg_distal_reg_enhancer_synergy Public

    Jupyter Notebook

  6. tss-annotation tss-annotation Public

    Python 2

Repositories

Showing 9 of 9 repositories
  • encode-202006-jamboree-detrout-rna-sc-pipeline Public

    My efforts at getting the single cell RNA seq pipelines to run

    ENCODE-AWG/encode-202006-jamboree-detrout-rna-sc-pipeline’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Feb 27, 2024
  • single_cell_annotation Public
    ENCODE-AWG/single_cell_annotation’s past year of commit activity
    Python 0 2 0 2 Updated Nov 22, 2022
  • mpra_starr_qc Public

    QC pipeline for MPRA and STARR-seq experiments

    ENCODE-AWG/mpra_starr_qc’s past year of commit activity
    R 0 MIT 2 0 0 Updated May 17, 2021
  • tss-annotation Public
    ENCODE-AWG/tss-annotation’s past year of commit activity
    Python 0 2 0 0 Updated Apr 16, 2021
  • nawg_distal_reg_enhancer_synergy Public
    ENCODE-AWG/nawg_distal_reg_enhancer_synergy’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 12, 2020
  • scrna-count-analysis Public

    Notebooks to analyze scRNA count matrices

    ENCODE-AWG/scrna-count-analysis’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 12, 2020
  • locusselect_applications Public

    wrapper scripts, examples, jupyter notebooks for locusselect project. The locusselect repo contains the core functional python scripts needed for locus selection.This repo provides a way to track applications of locus selection scripts for specific genes/cell lines, etc.

    ENCODE-AWG/locusselect_applications’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 11, 2020
  • locusselect Public Forked from kundajelab/locusselect

    extraction of data embeddings from deep learning model layers; computation of embedding distance and visualization with umap/tsne

    ENCODE-AWG/locusselect’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Jun 8, 2020
  • HiCSampler Public Forked from JRowleyLab/HiCSampler
    ENCODE-AWG/HiCSampler’s past year of commit activity
    Python 0 5 0 0 Updated Jun 7, 2020

Top languages

Loading…

Most used topics

Loading…